PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G052500.1.p
Common NameGLYMA_18G052500, LOC100790732
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 381aa    MW: 40970 Da    PI: 6.5792
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G052500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10182240563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l se+
  Glyma.18G052500.1.p 182 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 240
                          9*****************************************99999888777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-16178242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.818180243IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-8182237No hitNo description
SuperFamilySSF579597.74E-11182233No hitNo description
PfamPF001703.9E-9182240IPR004827Basic-leucine zipper domain
CDDcd147031.42E-24183232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MATQTQDPRS NPNPNPNAMS ATPSSSFFIR AAGGNGPSAA PVAGSGESHS HHRRAHSEVS  60
FRLPDDMIDL SPSDPFNGGS STASFEEIGS EDDLFSTYID VEKLGAGRGG NGSDQSGYGN  120
GAGSSCYNDG EKSPSTAAAR PRHRHSSSVD GSTSTSMFGE IMDAKKAMPP DKLAELWNID  180
PKRAKRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLYQ RDTTGLSSEN  240
TELKLRLQAM EQQAQLRDVL NDALMKEVER LKIATGEALN QSESFNLGMH QMPYAGSNFF  300
SIPPHSGPSG HQNMQLPPFG HSHSTVPTHQ LQQTNSHQMS DILQNDQLGR LQGLDISSKG  360
TPVVKSEGPS ISANESSTTF *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G052500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552912.10.0transcription factor RF2b
SwissprotQ6S4P41e-107RF2B_ORYSJ; Transcription factor RF2b
TrEMBLK7MQ320.0K7MQ32_SOYBN; Uncharacterized protein
STRINGGLYMA18G05880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-92basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]