PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G043900.1.p
Common NameGLYMA_18G043900, LOC100818019
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 679aa    MW: 76538.2 Da    PI: 5.6068
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.6e-5681351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgk
  Glyma.18G043900.1.p   8 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIHEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGK 96 
                          79****************************.99***************6434445667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s +++++g+kktLv+y+grap+g +t Wvmheyrl
  Glyma.18G043900.1.p  97 DRKVNS-ESRAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-654158IPR003441NAC domain
PROSITE profilePS5100560.8638158IPR003441NAC domain
PfamPF023653.6E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MNMAPVSLPP GFRFHPTDEE LVSYYLKRKI NGRKIELEII HEVDLYKCEP WDLPGKSLLP  60
GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSESRAIGMK KTLVYYRGRA  120
PHGCRTGWVM HEYRLDETQC ETNSGLQDAY ALCRVCKKTA VIPPKVGDQH YVNVPSHVNQ  180
ITSDQSSSID IEIYSEGRGE VLESSNYLMP WDTCPSPNIN IGSALNININ GGTRDNNIGT  240
WSHFLAEDLP NLPTSASSFP NYGSMSYPPS KVDIALECAR MQHRFTMPPL EVQDFPQVGI  300
SELKMAQASG SNMCGGSRNN ETDILQEILS VAHASHELIN QSNYSSHSQA LGANENNYAA  360
PHESDFTFMV GNNYNRVNDM NTMGFVDKAW EDPNARSIEI GDLDDGFKTE RMVENLRWVG  420
MSSKNMEKGF MEEQKIVPIE HISNFQTNRE ENEVQVGSQQ HNNNKELNDT DIDDFSMGFI  480
NGDDHNENFI DEGNINYSNS TNFEVVEETK VSHGMFVSTR QVADTFFHQI APSQTVKVQL  540
NPLMAEDQSI ENAVMVNQGP PFFRKFKAYV MGKLTKSSNT IASALVFLFA LLLMHCVFLK  600
EQVEDLKSDP KCFDGANSMK KIMRQPAENI IWNEQENFWS VGIKCGKGFS VVLKKIGIFL  660
TISLALCTMW ANHVIVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-57316015170NAC domain-containing protein 19
3swm_B3e-57316015170NAC domain-containing protein 19
3swm_C3e-57316015170NAC domain-containing protein 19
3swm_D3e-57316015170NAC domain-containing protein 19
3swp_A3e-57316015170NAC domain-containing protein 19
3swp_B3e-57316015170NAC domain-containing protein 19
3swp_C3e-57316015170NAC domain-containing protein 19
3swp_D3e-57316015170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G043900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552888.20.0NAC domain-containing protein 86
TrEMBLI1MZI00.0I1MZI0_SOYBN; Uncharacterized protein
STRINGGLYMA18G05020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-155NAC domain containing protein 28