PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G030300.1.p | ||||||||
Common Name | GLYMA_18G030300, LOC100783469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 34859.3 Da PI: 8.4425 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 26 | 71 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT eE +++ a + + ++ +W ++a++++ g+t ++++ ++ Glyma.18G030300.1.p 26 EWTREENKKFESALAIYDKDtpdRWLRVAAMLP-GKTVYDVIKQYRE 71 6********************************.********99986 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.8e-13 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Glyma.18G030300.1.p 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.299 | 22 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 23 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-6 | 26 | 72 | No hit | No description |
Pfam | PF00249 | 2.0E-6 | 26 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-11 | 26 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.353 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-16 | 121 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-17 | 122 | 174 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.7E-11 | 123 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 123 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-8 | 126 | 170 | No hit | No description |
Pfam | PF00249 | 5.7E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEFETPHQTC FMSNSSWFSQ ESHYTEWTRE ENKKFESALA IYDKDTPDRW LRVAAMLPGK 60 TVYDVIKQYR ELEEDVCEIE AGRIPVPGYP TSSFTLKMVD NQCYDACRKK PATLRSSDQE 120 RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKLSGGK 180 DNKRRPSIHD ITIVNLTSDQ EKPLLLNDES HMTFEQQKLT SMPKVQLEWI NHHDNGSRMV 240 VNPNYDMFMS PSSGISSKTL KLQGQDFYEC AFHETYAKLK NSGFRTTSRD FNKEGIHAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 27 | 97 | 11 | 81 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21208 | 0.0 | seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G030300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031200 | 0.0 | KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601963.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_006601964.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_006601965.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_006601966.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 4e-88 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | K7MPL9 | 0.0 | K7MPL9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G03430.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-89 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G030300.1.p |
Entrez Gene | 100783469 |
Publications ? help Back to Top | |||
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