PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G027000.4.p
Common NameGLYMA_18G027000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 847aa    MW: 94183.4 Da    PI: 8.3086
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G027000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.55.9e-08250268119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG H+C++lCH+G CppC+
  Glyma.18G027000.4.p 250 CGVHRCIELCHPGACPPCR 268
                          ******************7 PP

2zf-NF-X118.15.9e-06410429120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+H C++ C+ G+CppC++
  Glyma.18G027000.4.p 410 CGRHACKRRCCDGDCPPCSE 429
                          ******************85 PP

3zf-NF-X117.49.5e-06431455119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkC ++CH+GpC pCp
  Glyma.18G027000.4.p 431 CGrklrckNHKCPSPCHRGPCAPCP 455
                          777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.74E-585158No hitNo description
PROSITE patternPS01359086152IPR019786Zinc finger, PHD-type, conserved site
CDDcd060085.28E-5186234No hitNo description
PfamPF014220.068198215IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072198216IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-9240288No hitNo description
PfamPF014223.0E-6250268IPR000967Zinc finger, NF-X1-type
SMARTSM004381.5E-4250269IPR000967Zinc finger, NF-X1-type
CDDcd060089.70E-9293340No hitNo description
PfamPF014220.027303321IPR000967Zinc finger, NF-X1-type
SMARTSM004389.1E-4303322IPR000967Zinc finger, NF-X1-type
CDDcd060088.41E-9347396No hitNo description
PfamPF014220.0029357376IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16357377IPR000967Zinc finger, NF-X1-type
CDDcd060084.93E-8400448No hitNo description
PfamPF014228.2E-4410428IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092410429IPR000967Zinc finger, NF-X1-type
CDDcd060089.17E-11427475No hitNo description
PfamPF014220.0031431455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079437456IPR000967Zinc finger, NF-X1-type
SMARTSM00438210494515IPR000967Zinc finger, NF-X1-type
PfamPF01422110504514IPR000967Zinc finger, NF-X1-type
PfamPF0142232523532IPR000967Zinc finger, NF-X1-type
SMARTSM0043894523568IPR000967Zinc finger, NF-X1-type
PfamPF014221.2605615IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6605632IPR000967Zinc finger, NF-X1-type
SMARTSM004380.51642660IPR000967Zinc finger, NF-X1-type
SMARTSM0043855705727IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MTSPWNKIHI HHSHPSPSPS PPPPPPPLLS DSDSDGGDSS SSAPLRHSDL SDSIFKPYLE  60
LSGHSGTDLS KIQSFLTSSS AGALSCLICL ERIKPSDATW SCSSLCFAVF HLFCIQSWAR  120
QASDLAAARA VTRLSISSAS ASDTALWNCP KCRSEYNKSH IPKTYFCFCG KIENPPNDPW  180
ILPHSCGEVC GRQLKHNCGH HCLLLCHPGP CPSCPKLVKV RCFCGCLEDV RRCGFKEFSC  240
NKPCSKFLDC GVHRCIELCH PGACPPCRTR GVYTCRCGKV KEERECFDRG FQCENPCEKR  300
LGCGKHVCER GCHSGECGEC PLKGKRTCPC GKRVYEGMPC DAPLQLCGAT CDKMLPCGYH  360
RCPERCHRGQ CVETCRVVVK KSCRCGSLKK DVPCYQDLAC ERKCQRMRDC GRHACKRRCC  420
DGDCPPCSEI CGRKLRCKNH KCPSPCHRGP CAPCPIMVTI SCACGETRFE VPCGTEMDQK  480
PPRCPKPCPI TPLCRHASNI KPHKCHYGAC HPCRLPCAEE YQCGHTCKLR CHGARPPPNP  540
EFSLKPKKKK VIQQSEGVPG TPCPPCPELV WRSCVGQHIG AERMMVCSDK SQFSCENLCG  600
NPLPCANHYC TKTCHALENQ LQGSEPCEDC YLPCQKEREP ACPHHCPRRC HPEDCPPCKV  660
LIKRSCHCGA MVHVFECLYY NSLSAKGQET VRSCGGPCHR KLPNCTHLCP ETCHPGQCLN  720
AEKCCKKVTV RCKCKTLKKE WVCQDVQAAY HLAGCHPMDI PKIQFGVGLI PCNSDCQSKV  780
QVVESELQLR KTRVTEVQEP DAEKSVRKWR KRREQVLESK EASKLQKKHQ LQGCKREKRP  840
RAKEEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1806813RKWRKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.397140.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G027000.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552843.10.0NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0R0F3U30.0A0A0R0F3U3_SOYBN; Uncharacterized protein
STRINGGLYMA18G03080.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors