PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G025600.1.p | ||||||||
Common Name | GLYMA_18G025600, LOC100791250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19897.8 Da PI: 7.381 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l Glyma.18G025600.1.p 11 SCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100 6***************************************************************************************** PP DUF260 91 kaelallkee 100 +++la +k++ Glyma.18G025600.1.p 101 QHDLAIAKDR 110 ****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.265 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKGYEPRSSS SCAACKLLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCHAAAAA 120 ATTTIPSPDI LHANVSLPPF PDFCTSSSDF NDIFCHSSSS QLLGRHETVD DFNQIPYIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 6 | 113 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 6 | 113 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24398 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G025600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236219 | 0.0 | AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552283.1 | 1e-131 | LOB domain-containing protein 21 | ||||
Refseq | XP_028212459.1 | 1e-131 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 5e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A445FN55 | 1e-129 | A0A445FN55_GLYSO; LOB domain-containing protein 21 | ||||
TrEMBL | I1MZ09 | 1e-129 | I1MZ09_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G02910.1 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-64 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G025600.1.p |
Entrez Gene | 100791250 |
Publications ? help Back to Top | |||
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