PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G018200.1.p | ||||||||
Common Name | GLYMA_18G018200, LOC106796800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34588.6 Da PI: 6.4026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.2e-21 | 122 | 172 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Glyma.18G018200.1.p 122 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 172 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-36 | 121 | 181 | No hit | No description |
SMART | SM00380 | 6.7E-41 | 122 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-23 | 122 | 180 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-33 | 122 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 122 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-15 | 123 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MATVMDMYNT SSIMIPDFLD QCSDQELMKA LEPFMKSDSS SITYPSFSSF SSSPNFSSTT 60 SYEQKVSITP NHASSIKLNQ LTPSQMFQIQ ARIQVPRGQF LSPKPIPMKH VRASPSSKPT 120 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDNAAFKLR GENARLNFPH 180 LRHHGARAYG EFGNYKPLPS AVDAKLQAIC QSLGTNSQKL KTQNPIVLDT HKAETETSEF 240 QDFNKVENYQ TSSSSAFSDE YSSSSSSSSP ESDITLLDFS DSCETMDNLG LDLEKYPSVE 300 IDWAALSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 121 | 179 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62416 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G018200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ924191 | 0.0 | JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014625788.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 6e-75 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | I1MYT3 | 0.0 | I1MYT3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G02170.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 4e-57 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G018200.1.p |
Entrez Gene | 106796800 |