PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G010800.1.p
Common NameGLYMA_18G010800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 456aa    MW: 51483.7 Da    PI: 6.6936
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G010800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.51.7e-24196249155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.18G010800.1.p 196 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 249
                          68*******************.9*******************************8 PP
2Response_reg81.82.1e-27191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k +y ev+++  ++ al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  Glyma.18G010800.1.p  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSKVMK 106
                          89*********************.***************999999**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el++
  Glyma.18G010800.1.p 107 GVQHGACDYLLKPIRMKELRN 127
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1462448IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3516150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4416140No hitNo description
SMARTSM004488.4E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.07118133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.42E-2920133No hitNo description
Gene3DG3DSA:1.10.10.604.7E-28194254IPR009057Homeodomain-like
SuperFamilySSF466891.34E-17194253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21196249IPR006447Myb domain, plants
PfamPF002491.3E-7198248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDNGCFSSPK RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSKVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEA KEFESFESIH LMRNGSELSD DGNLFAVEDV TSSKKRKDAD  180
SKHDDKECLD PSSTKKARVV WSVDLHQKFV KAVNQIGFDK VGPKKILDLM NVPWLTRENV  240
ASHLQKYRLY LSRIQKENDQ RSSSSGMKHS DFPSKDMGSF GFQNSVIKQQ NDVAIDNYNH  300
SDGSLQLQNV ETKSHEADPK GIVSQSTIAK KGRILTGNIA DTNMRESLRV GLNQTFPPLE  360
SEGNHAVFDC SMPTPYSWTE VPHMQLKEEH KSLVYLEDSF NQLPLHGKQQ QHIHVDQSQS  420
VASISSAPSI TEEEAAACIE PKPCLQITTM IMPVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17192254163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G010800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213070.10.0two-component response regulator ARR11-like isoform X1
SwissprotQ5N6V81e-138ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLK7MPB50.0K7MPB5_SOYBN; Two-component response regulator
STRINGGLYMA18G01434.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-124response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]