PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.18G005600.5.p | ||||||||
Common Name | GLYMA_18G005600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 304aa MW: 33255.2 Da PI: 8.0669 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 4e-42 | 171 | 247 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dls+ak+yhr+h+vCe+hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+ Glyma.18G005600.5.p 171 CQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRQRLSDHNARRRKTQP 247 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-35 | 163 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.248 | 168 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-39 | 169 | 250 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-32 | 171 | 244 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MEWNAKSLGQ WDWEHLFFNT KAAENPRLQP TDCSSEADPE INVGLLYPSG GSACSGSELI 60 HASSSRSSKS ASNNSSSNGD SRESILTLEG SQDDSTGKKE LCNGEPVETS PAAVPSPVSG 120 EPLLTLKLGK RLYFEDVCTG SDSKKPSSFE VPILSGKKYK TSSQTVQHPS CQVEGCGLDL 180 SSAKDYHRKH RVCEAHSKSP KVVIAGLERR FCQQCSRFHA LSEFDDKKRS CRQRLSDHNA 240 RRRKTQPDSI QLNPSALSSS PYGITGSFPS LGKSIACLAH WFSFAVYYFG MHIIHIIIFP 300 SQF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 171 | 244 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 226 | 243 | KKRSCRQRLSDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.18G005600.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093985 | 0.0 | BT093985.1 Soybean clone JCVI-FLGm-24F23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601888.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006601889.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006601890.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006601892.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_006601893.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_014626498.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214556.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214557.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214558.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214559.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214560.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028214561.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Swissprot | A2X0Q6 | 1e-59 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-59 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A0R0ETX4 | 0.0 | A0A0R0ETX4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G00903.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 9e-56 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.18G005600.5.p |