PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G257700.1.p
Common NameGLYMA_17G257700, LOC100816726
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 418aa    MW: 45193.3 Da    PI: 9.3299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05173195223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C++Cg++F+  ++L+ H+ + H
  Glyma.17G257700.1.p 173 ACSHCGEVFPKMESLELHQAVrH 195
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280172195IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829172200IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-27197413No hitNo description
Gene3DG3DSA:3.90.228.109.3E-17199413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MALLTSLPEQ SSSTPKRHHK RKPQQQQQQQ KQKPASSWDQ IKNLLTCKQI EGSRVHDPSK  60
VVSGYSKLGS SCSSICSFRD VVHGNTRVVH RSDNSSPESS SLGQETNGLL TRKPVTTTTT  120
TTTRSSAKSH GGATYTSSSS SRGMQFRKLS GCYECHMIID PSRLPIARST VCACSHCGEV  180
FPKMESLELH QAVRHAVSEL GPEDSGRNIV EIIFKSSWLK KDNPICKIER ILKVHNTQRT  240
IQRFEECRDT VKNRALGSTK KNPRCAADGN ELLRFHCTTL TCALGARGSS SLCASVHGSC  300
GVCTIIRHGF QGGSCGGGSG DHGKAKGVRT TASSGRAHDS VVCGDATRRA MLVCRVIAGR  360
VKRVVEDAPS EEEHVSVASY DSVAGYAGIY SNLEELVVFN PKAILPCFVV IYKVPSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.284630.0leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G257700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550423.10.0uncharacterized protein LOC100816726
RefseqXP_028208203.10.0uncharacterized protein LOC114391399
TrEMBLA0A445GBX30.0A0A445GBX3_GLYSO; Uncharacterized protein
TrEMBLI1MY280.0I1MY28_SOYBN; Uncharacterized protein
STRINGGLYMA17G37710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-160C2H2-like zinc finger protein