PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G255800.1.p | ||||||||
Common Name | GLYMA_17G255800, LOC100810841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 554aa MW: 60695.8 Da PI: 7.0911 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.6e-11 | 397 | 455 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR++A rs +RK +i eLe kv++L++e ++L + +l+ ++lkse+ Glyma.17G255800.1.p 397 KRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSEN 455 9********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.7E-14 | 393 | 457 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.955 | 395 | 458 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.94E-10 | 397 | 452 | No hit | No description |
Pfam | PF00170 | 1.7E-10 | 397 | 455 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.3E-11 | 397 | 453 | No hit | No description |
CDD | cd14703 | 4.07E-14 | 398 | 470 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MVGVDQSNMN MNRNSGVFGS SSGGALRPPN RLNNQMGVAE NQNQKPYGMP PSHPNTNISP 60 SSPYPQFLGS QSQSNSVSQR LGSPNLSPAS SHSRSLSQPS FFSLDSLPPL SPSPYKEPSF 120 SDSISTDVSA EESLPTSHAP LPNRGHALQL GHSLPPRKGH RRSSSDSPLG IADFIQSAPQ 180 FVPSKTWSNR ENSASRGGNS GFEKPIQLVL KEPIKDMDRV DGFGGEPMVG RKEDDALDDL 240 FSAYMNLDNI DGLNFSGMED KDLDSRTSGS KTVESSDNEV ESHANGKVTG SQGASSRCSE 300 ERREGVKRSS NGDVAPGSRH RRSFSLDSSI GNFHIGDESP KLPPSQNRFG QHSPSSSIDG 360 KTSETSMEFG NGEFSSEELK KIKENDKLAE IAMADPKRAK RILANRLSAA RSKERKMRYI 420 SELELKVQTL QTETTTLSTQ FTKLQMDNSE LKSENNEYKL RIQALEQQSQ LKDALNETLD 480 AEVRRLRRTV AELGGESLLS SRMAQQLAIS QQVFQLQHQQ HPNQLRHVQL DNSHSQEQTQ 540 TQSQCHNGKA TAY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.14291 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G255800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550412.1 | 0.0 | transcription factor RF2a | ||||
Refseq | XP_028209566.1 | 0.0 | transcription factor RF2a-like | ||||
TrEMBL | A0A445GBU6 | 0.0 | A0A445GBU6_GLYSO; Transcription factor VIP1 isoform A | ||||
TrEMBL | I1MY15 | 0.0 | I1MY15_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G37510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 5e-70 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G255800.1.p |
Entrez Gene | 100810841 |