PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G255000.1.p | ||||||||
Common Name | GLYMA_17G255000, LOC100807290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 327aa MW: 35594.1 Da PI: 7.2575 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 223 | 5.8e-69 | 111 | 262 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrel.kskkqsalsst 89 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + ++skr+re+ + +++ +l++ Glyma.17G255000.1.p 111 GGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQNQQpqfRGDHSKRHRENiEGAAAGSLACV 200 789****************************************************99999888888888999999998233444555555 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ + ++ le ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ Glyma.17G255000.1.p 201 PVPIT--TTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTD 262 55555..5679999************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.0E-66 | 112 | 262 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.6E-27 | 114 | 156 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.5E-24 | 213 | 260 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAGFFSLGRQ NKAEEQEEDQ REDNCQFLFR NNVNEEIYNK GFEIWPQSSY HHHHQNLTNF 60 YSFGVGPSRR NNNNSSSNNN VNDEVSVSFS DESNRFGFTV MRSGGGGVGG GGMNCQDCGN 120 QAKKDCQHLR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ QQLSALQHQQ QNQQPQFRGD 180 HSKRHRENIE GAAAGSLACV PVPITTTGLE LGQFPPELNS PAVFRCVKVS AMDAPDERYA 240 YQTAVNIGGH VFKGILYDQG TDGPYAGAGC EGSSGGGGEA QPLSLMAAAT TTTAATTSGN 300 PFEASLYTAP MNAYMAGTHF FPPPRS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G255000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550407.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9FXH7 | 2e-77 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | I1MY05 | 0.0 | I1MY05_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G37410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 | Representative plant | OGRP1872 | 11 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-66 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G255000.1.p |
Entrez Gene | 100807290 |
Publications ? help Back to Top | |||
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