PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G245200.1.p | ||||||||
Common Name | GLYMA_17G245200, LOC100802503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 27737.2 Da PI: 10.441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 74 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++ Ed +l +v+ +G+++W++I+r++ gR++k+c++rw + Glyma.17G245200.1.p 74 KGPWSAKEDRILTGLVEAHGPRNWASISRHIK-GRSGKSCRLRWCNQ 119 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 128 | 168 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++t Ede +++a++++G++ W+tIar+++ gRt++ +k++w+ Glyma.17G245200.1.p 128 PFSTREDEVILHAHARFGNK-WATIARMLP-GRTDNAVKNHWN 168 79******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.43 | 72 | 124 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 72 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-14 | 73 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 74 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 75 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-12 | 76 | 118 | No hit | No description |
SMART | SM00717 | 1.5E-13 | 125 | 173 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.911 | 126 | 175 | IPR017930 | Myb domain |
CDD | cd00167 | 3.26E-10 | 128 | 171 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-21 | 128 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-13 | 128 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MNLTHFPLHI YNFPDNHHSS KCHTLKHKQT PKKEKMKAMK RCSSSSSSSY SSASESTPQS 60 NQNKNSNNFC YKIKGPWSAK EDRILTGLVE AHGPRNWASI SRHIKGRSGK SCRLRWCNQL 120 SPTVEHRPFS TREDEVILHA HARFGNKWAT IARMLPGRTD NAVKNHWNAT LKRRRFGADV 180 VVEDDPLTAL TLAPPGSGCC GRGEERRGVS PAGFWDAMRD VVAREVRGYV SSSFSDNLAS 240 NEGLSKY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-38 | 73 | 174 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-38 | 73 | 174 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-38 | 73 | 174 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-38 | 73 | 174 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-38 | 73 | 174 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G245200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549412.2 | 0.0 | transcription factor MYB25 | ||||
Refseq | XP_028210122.1 | 0.0 | transcription factor MYB25-like | ||||
TrEMBL | A0A445GBJ5 | 0.0 | A0A445GBJ5_GLYSO; Transcription factor MYB73 | ||||
TrEMBL | K7MNR7 | 0.0 | K7MNR7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G36370.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-53 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G245200.1.p |
Entrez Gene | 100802503 |