PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G241000.3.p | ||||||||
Common Name | GLYMA_17G241000, LOC102668194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 29153.5 Da PI: 6.3395 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 105 | 144 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Glyma.17G241000.3.p 105 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 144 8******************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.303 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-14 | 101 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-14 | 105 | 148 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-15 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-10 | 105 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAGDVGRALP PPDSEEFSTL FSQLLHNSPP LGMDPNHSPP DFTPHNNTID ININNNIINN 60 NNNNNPVPSS PSNFNFSDPH HYIPASDATT FKQHTPDFTS FSVERRRSRI NEKMKALQNL 120 IPNSNKTDKA SMLDEAIEYL KQLQLQVQML MMRNGLSLHP MSLPGGLRPM IMSQTGLNLD 180 GSNGFHNSTS AIASSSNDES LVRHAFSFPK QCSISNQSIG VPSVTNIATS DTSSTFHPSI 240 KDALYGNMPQ LFMDTTTMGK PSPDVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G241000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 6e-84 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624838.1 | 0.0 | transcription factor ALC isoform X3 | ||||
TrEMBL | A0A0R0FQZ0 | 0.0 | A0A0R0FQZ0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35951.1 | 1e-170 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 7e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G241000.3.p |
Entrez Gene | 102668194 |