PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G240100.1.p
Common NameGLYMA_17G240100, LOC100810839
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 175aa    MW: 19785.3 Da    PI: 10.3462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G240100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-174594255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Glyma.17G240100.1.p 45 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPMAAARAYDTAVFYLRG 94
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103222.14245102IPR001471AP2/ERF domain
SMARTSM003804.1E-3645108IPR001471AP2/ERF domain
CDDcd000186.52E-2746104No hitNo description
Gene3DG3DSA:3.30.730.105.2E-3046103IPR001471AP2/ERF domain
PfamPF008471.6E-104694IPR001471AP2/ERF domain
PRINTSPR003671.4E-114657IPR001471AP2/ERF domain
PRINTSPR003671.4E-1184104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEERDHRCSN NSTMITTTKK KTSRRSPTSD KLKNQHPCEK QAMKPYRGIR MRKWGKWVAE  60
IREPNKRSRI WLGSYTTPMA AARAYDTAVF YLRGPTARLN FPELLFQDDQ EEGNDSVQHG  120
AAAGNMSADS IRRKATQVGA RVDALQTALH HHASSTNSLK PDLNEFPKLE SLQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1544102463ATERF1
3gcc_A3e-1544102463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.57700.0cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G240100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5149080.0AF514908.1 Glycine max dehydration responsive element binding protein (DREB1) mRNA, complete cds.
GenBankKT0310880.0KT031088.1 Glycine max clone HN_CCL_2 AP2-EREBP transcription factor (Glyma14g09320.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550331.11e-130ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC309e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLI1MXM41e-129I1MXM4_SOYBN; Uncharacterized protein
STRINGGLYMA17G35860.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-50related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]