PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G232700.1.p
Common NameGLYMA_17G232700, LOC100819396
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 610aa    MW: 66897.4 Da    PI: 7.2024
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G232700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24224268145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Glyma.17G232700.1.p 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 268
                          79****************************************985 PP
2QLQ62.31.3e-21154190137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  Glyma.17G232700.1.p 154 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 190
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.473155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-16155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847224268IPR014977WRC domain
PfamPF088791.2E-20225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDLGVVGLEG VVGSESGCVF GSSLASDPET KHKWYGSGLL KQERSAIATE DDEWRISKVA  60
KTDHDMSSAS KAMFFQQRNN SLLRSNNATL FSDGHHQSQM LNFSSPKSET LLVDKAFSNA  120
TLPFSYHQLS SYSRNTGYNS GSISMHGALA SVRGPFTPSQ WMELEHQALI YKYITANVPV  180
PTHLLIPIRK ALDSVGFCNF SSGLLRSNSL GWGGFHLGFS NSTDPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTNTP NASSNSTVVP GNHNNNTFAH  300
INVHHPLPPH SSPANTINRM FMSNNKENNN TSERMKDGLA LPMLPPTLEL KPKDNNNSFM  360
VHKHQEPYDE SSRNKNEFGL VTSDSLLNPS QKRSFDSSSS SSQKDDSSES QQQHSLRHFI  420
DDSPKPQSHH NHNHRSSSSI WPELDNMQSD RTQLSISIPI SSSDHFMSFA TSSPSNEKLT  480
LSPLRLSREF DPIQMGLGVG SASNEANTRQ ANWIPITWES SMGGPLGEVL NLSNNNNNSN  540
ASDQCGKNNN NTSALNLMKD DDDDDGWDNS PPPIGSSPTG VLQKTAFGSL SNSSAGSSPR  600
GAPENNNKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.179230.0root| somatic embryo| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G232700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549368.10.0growth-regulating factor 1
TrEMBLK7MNJ50.0K7MNJ5_SOYBN; Uncharacterized protein
STRINGGLYMA17G35100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-90growth-regulating factor 1