PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G232600.1.p
Common NameGLYMA_17G232600, LOC100818860
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 601aa    MW: 65630.5 Da    PI: 7.9539
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G232600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24224268145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Glyma.17G232600.1.p 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 268
                          79****************************************985 PP
2QLQ62.41.2e-21154190137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  Glyma.17G232600.1.p 154 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 190
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.473155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-16155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847224268IPR014977WRC domain
PfamPF088791.2E-20225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDLGVVGLEG VVGSESGCVF GSSLVSDPET KHKWYGSGLL KQERSAIATE DDEWRISKVA  60
KTDHDMSSAS KAMLFQQRNN SLLRSNNATL FSDGHHQSQM LSFSSPKSDS LLIDKASSNA  120
TLPFSSHQLS SYTRNTGYNS GSISMHGALA SVRGPFTPSQ WMELEHQALI YKYITANVPV  180
PTHLLIPIRK ALDSVGFCNF SAGLLRPNSL GWGGFHLGFS NNTDPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTTSN TPNASSNSVV PGNNNNTFAH  300
NNVHHPIPPH SSPVNTITRM FTSNKENNNS TSERMQDPAL PMLPPTLELK PKENNPFMIH  360
KHQIPSDEYS SRNNNEFGLV TSDSLLNPSE KRSFTSSQKN DSSESQQQHS LRHFIDDSPK  420
PQSNHHHRSS SIWPELDNMQ SDRTQLSISI PISSSDHFMS FTTSLPSNEK LTLSPLRLSR  480
ELDPIQMGLG VGSAPNEANT RQANWIPITW ESSMGGPLGE VLNLSNNNNS NASDQCGKNN  540
NNTSALNLMK DGWDNNPPSG SSPTGVLQKS AFGSLSNSSA GSSPRGAENN KEGATLCNAL  600
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350500.0pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G232600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549367.10.0growth-regulating factor 1
RefseqXP_028211387.10.0growth-regulating factor 1-like
TrEMBLA0A445GAS30.0A0A445GAS3_GLYSO; Growth-regulating factor 6
TrEMBLK7MNJ40.0K7MNJ4_SOYBN; Uncharacterized protein
STRINGGLYMA17G35090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-94growth-regulating factor 1