PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G231900.1.p | ||||||||
Common Name | GLYMA_17G231900, LOC100789985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 34394.3 Da PI: 7.2494 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + +++ g++R++k+c++rw++yl Glyma.17G231900.1.p 14 RGPWSPEEDATLKNYVETHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + +q+G++ W++Ia++++ gRt++++k++w++ Glyma.17G231900.1.p 69 GGFTEEEDNIICTLYAQMGSR-WSAIASKLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.225 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.91E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.209 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKNYVE THGTGGNWIA LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC TLYAQMGSRW SAIASKLPGR TDNDVKNYWN TKLKKKIMAR 120 KVTLKTLTHN DTLPSTSTPS SLTNNQNVKT SQNSPFPSQN QNSPPSVLPV LDANNALFIT 180 NNEKSIISFD QTHHGLYSPQ VMDDVVSQIG ASSRIINNNN NNNPMLSLSQ EGSSSISDSS 240 SIAMNNNNVS HPEQQHASDE SMEMLMDFGF GFPFDFANGP NCHYERVGEF ATSSYPEWVD 300 FSYADIKPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G231900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 2e-56 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550294.1 | 0.0 | transcription factor RAX2 | ||||
Refseq | XP_028210151.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A445GAQ1 | 0.0 | A0A445GAQ1_GLYSO; Transcription factor RAX3 | ||||
TrEMBL | K7MNI7 | 0.0 | K7MNI7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35020.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 8e-74 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G231900.1.p |
Entrez Gene | 100789985 |