PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G228700.1.p | ||||||||
Common Name | GLYMA_17G228700, LOC102664611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 34004.3 Da PI: 9.7327 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.1e-18 | 173 | 206 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+t++TplWR+gp g+k+LCnaCG+++rk + Glyma.17G228700.1.p 173 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 206 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 6.18E-12 | 167 | 207 | No hit | No description |
PROSITE profile | PS50114 | 13.072 | 167 | 203 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-16 | 167 | 218 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.6E-15 | 171 | 206 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.00E-13 | 172 | 209 | No hit | No description |
Pfam | PF00320 | 2.7E-16 | 173 | 206 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 173 | 198 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTPYSLNPPG PSIQAGQTQL FNISPNNQDC RTIFNIFDPR KTRIEIGGLR DNYHQQDDKM 60 MVLHDGSSSN SNKSSFNNNI SPEPVVVMVD PIISSACDQQ HNLPYEEESK NIDDHGSGNK 120 WMSSKMRLMK KMMRPSMSPT TDKAINSGLE SSSSRYSQRS LCNNNASSTT RVCSDCNTST 180 TPLWRSGPKG PKSLCNACGI RQRKARRAMT KATSGLITPI TCAKTRVHNK EKKSRANHFA 240 QFKNKYKSTT TTSAGSSEGV RKLEYLKDFA ISLRSNNSDF EQGFPRDEVA EAALLLMDLS 300 CGFVHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12633 | 1e-172 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G228700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601232.1 | 0.0 | putative GATA transcription factor 22 | ||||
Refseq | XP_028209837.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A445GAN8 | 0.0 | A0A445GAN8_GLYSO; Putative GATA transcription factor 22 | ||||
TrEMBL | I1MXA9 | 0.0 | I1MXA9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G34670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-19 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G228700.1.p |
Entrez Gene | 102664611 |