PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G222300.1.p
Common NameGLYMA_17G222300, LOC100127380
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 313aa    MW: 35018.5 Da    PI: 8.1457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G222300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.61.3e-18136176241
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 
                           Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkk  ++
  Glyma.17G222300.1.p 136 MDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKSSQN 176
                          6***************************99******85554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-21128216IPR003657WRKY domain
PROSITE profilePS5081119.497130218IPR003657WRKY domain
SuperFamilySSF1182906.41E-15133173IPR003657WRKY domain
SMARTSM007744.3E-24135217IPR003657WRKY domain
PfamPF031061.8E-20137215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEPTCGDTSL DLNVDPSTMH MDGALVEELR RLSCENKRLT HLCENYMALQ KQLSQLINTN  60
FDQQLDYPIE SSRKRKAAES DQCCTNKFVG VSNNNAECSS IITEDSFKKY KDFNSSPKVS  120
KFLVKTEASN NSLYVMDGYQ WRKYGQKVTR DNPSPRAYFR CSFAPSCPVK KKSSQNKIKL  180
SNFSNVSHHR MIIWVQRSLE DPTILVTTYE GEHNHGHQRA EISLVSNQSE ALPPLKGSSP  240
VSSPNTATIR SAVCPTVTLD LVKSGLVEFE SAQKSSIQQF LVQQMATSLT RDPNFTTELA  300
TAISGKILEA QW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-151352151471WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.251910.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G222300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195700.0EU019570.1 Glycine max WRKY30 (WRKY30) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601212.10.0WRKY transcription factor 30 isoform X1
RefseqXP_028209792.10.0probable WRKY transcription factor 40 isoform X1
TrEMBLA0A445GA740.0A0A445GA74_GLYSO; Putative WRKY transcription factor 40
TrEMBLK7MNC20.0K7MNC2_SOYBN; Uncharacterized protein
STRINGGLYMA17G33891.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-63WRKY DNA-binding protein 40