PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G217100.1.p | ||||||||
Common Name | GLYMA_17G217100, LOC100777171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 668aa MW: 73691.4 Da PI: 6.3288 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.2 | 1.3e-26 | 206 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+ L G++kA+Pk+il+lm+ + Lt+e+v+SHLQkYRl Glyma.17G217100.1.p 206 KPRVVWSVELHRKFVSAVNLL-GIDKAVPKKILDLMNDEKLTRENVASHLQKYRL 259 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.1 | 6.3e-26 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+ + +++l+++l++ +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +++++++ + Glyma.17G217100.1.p 22 VLAVDDDSTCLMVLETLLRRCQY-HVTTTKNAITALNLLRENKtmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNDDPKMVMK 109 799********************.***************99999********************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.17G217100.1.p 110 GITHGACDYLLKPVRIEELQN 130 ******************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.6E-164 | 1 | 666 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.7E-42 | 19 | 156 | No hit | No description |
SuperFamily | SSF52172 | 2.56E-35 | 19 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.0E-31 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.416 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.2E-23 | 22 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.76E-26 | 23 | 136 | No hit | No description |
PROSITE profile | PS51294 | 10.403 | 203 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-18 | 203 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 204 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-24 | 206 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 208 | 258 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 668 aa Download sequence Send to blast |
MTVVENHTMD DLRDQFPIGM RVLAVDDDST CLMVLETLLR RCQYHVTTTK NAITALNLLR 60 ENKTMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NDDPKMVMKG ITHGACDYLL 120 KPVRIEELQN IWQHVIRRKK IDSKEQNKTS DYDKTNSDSG NGRGSAATGN SDQNGKPSKK 180 RKDQDEDDDE ENDTDHDNED PSTQKKPRVV WSVELHRKFV SAVNLLGIDK AVPKKILDLM 240 NDEKLTRENV ASHLQKYRLY LKRISCGANR QANMVAALGT ADSSYLRMGS LSGVGHLQTL 300 TGPQQFHNNA FRPFPPGGMI GRLNTSVGLN NHGLSSSEAL QLSHAQNLNN SINDPLKFQS 360 SIACGNQNAI QGMPMSIGLD QLQHNKGVSV SVGPIQNMSP LIDARPTFAV SNRLSDQIPK 420 VTMGCSPSPV LDVSNNALVL KADSENTQGR GVYENLTSVA SQHSQFSLPL LGHGRCSDIW 480 SSPMRSSGTN SYPPSETLQG GNLSGASSIT SLSNQSHDSQ TDMHSQGLIF TNNSGQISNN 540 VPFLGWDDHN HDSSYHSNVI GNSIDSLIDP EGHTSINSTY NRNLDFNFCD PLQMKHDGIM 600 GLSDENSLKQ QHRYIMNQQK SQNSRAPNNI GSLEDFVSSM MKQKQDKVKF LDGSYLCNNN 660 YPDGTSM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-24 | 202 | 265 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G217100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC236221 | 0.0 | AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549312.1 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | B8AEH1 | 1e-138 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
Swissprot | Q6K8X6 | 1e-138 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | I1MWY8 | 0.0 | I1MWY8_SOYBN; Two-component response regulator | ||||
STRING | GLYMA17G33230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-129 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G217100.1.p |
Entrez Gene | 100777171 |
Publications ? help Back to Top | |||
---|---|---|---|
|