PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G210500.1.p | ||||||||
Common Name | GLYMA_17G210500, LOC100784305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21765.4 Da PI: 8.5057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.2e-18 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ + g Glyma.17G210500.1.p 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMSG 55 59*****999.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.82E-22 | 5 | 65 | No hit | No description |
Pfam | PF00847 | 3.7E-11 | 6 | 53 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 6 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.891 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MVQAKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMSGQNAKT 60 NFPTQMNQPQ GATTTTPCVD PFSSPNVLSE HLSRKLKRCC KDPSPSLTCL RLDADNSHIG 120 VWQKGAGPHS DSNWIVRVEI GKKLHAEGES SSVSSSAAGG SPPKPSVGHG DGYGDEEDRI 180 AMQMIDELLN WNHPCGSSN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 6 | 71 | 14 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G210500.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549279.1 | 1e-148 | ethylene-responsive transcription factor SHINE 2 | ||||
Refseq | XP_028208690.1 | 1e-148 | ethylene-responsive transcription factor SHINE 2-like | ||||
Swissprot | Q3E958 | 9e-69 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A0B2RH33 | 1e-147 | A0A0B2RH33_GLYSO; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | I1MWS0 | 1e-147 | I1MWS0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G31900.1 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11190.1 | 7e-61 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G210500.1.p |
Entrez Gene | 100784305 |
Publications ? help Back to Top | |||
---|---|---|---|
|