PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G208500.3.p
Common NameGLYMA_17G208500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 898aa    MW: 97609.3 Da    PI: 6.0831
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G208500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.32e-15473511341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCkkskClk+YC+Cfaag++C++ C C++C N+ e
  Glyma.17G208500.3.p 473 CKRCNCKKSKCLKLYCDCFAAGTYCTDPCACQGCLNRPE 511
                          89**********************************876 PP
2TCR49.58.7e-16558597140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCk+s ClkkYCeC++a++ Cs+ C+Ce+CkN +
  Glyma.17G208500.3.p 558 RHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNVH 597
                          589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.9E-16471512IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.276472598IPR005172CRC domain
PfamPF036381.3E-11474509IPR005172CRC domain
SMARTSM011142.2E-17558599IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-11560596IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MMDSPEPSKN NNGSSSSAST LNNNNNNDDA PSSESPQVQE SPFLRFVKTL SPIPTKASHM  60
TQGCVGLSSP PLVFKSPRIS HRETQLTKRP QGTQSFGGVI PQSVNEGNRL GEAPGDSRTS  120
NSHQSLPERF INDTQQVFDF KNDENTQYYS SPSCIDKYLV DPGDIDQMYS ADQDVQQQST  180
DAAETSLSDQ THSKNNILNF DRKDGPGDKV EESLPLSEDF NKVHLEKAAY GEEPEKMEGE  240
KNDVEWSSQE PAKLESILAA DGFDKRYSHG PLPQDVKGCE DYNEMVPTSH VTAENILQDG  300
SEATLKHHGI RRRCLQFGEA ASNALGRNVK LNAASNTMIT VKPSELVTSL CPRRGSGNFP  360
STSPKPSGIG LHLNSIINAI PIDQAATTGV RLSDSSQGMK STSSIRLQRM ENVKRSILSS  420
NVDGRSLVDT RTESHEIDDT VATDTGNSED LNQPPSPCKK KKKTSVTADD NGCKRCNCKK  480
SKCLKLYCDC FAAGTYCTDP CACQGCLNRP EYVETVVETK QQIESRNPIA FAPKIVQPTT  540
DISSHMDDEN LTTPSSARHK RGCNCKRSMC LKKYCECYQA NVGCSSGCRC EGCKNVHGKK  600
EDYVAFGHTS SKERVSSIVE EGSDCTFHNK LEMVASKTVY DLHCLSPITP SLQCSDQGKE  660
DAKSRVISGN YLPSPESDVN MLASCTNYTK SSENLHGSEA LLDTNEMLGN TPYDSQIECS  720
DAALLQLTPL PNPEQSGTSS FSSVPNECAK ITHSRLSHGC IRQLPGGSLR WRSSPLTPST  780
RVGEAQYLQC SESDSKLFDI LENETPDILK EASTPMTSVK VNSPTQKRVS PPQSCHIGIG  840
SSSSGGLRSG RKFILKAVPT FPSLSPCINS KSNGDEDSCN SPSKSPLKAN ECPQRES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1947659614121Protein lin-54 homolog
5fd3_B3e-1947659614121Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84700.0cotyledon| hypocotyl| meristem| seed coat| somatic embryo| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO42181860.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G208500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0101650.0AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236112.20.0cysteine-rich polycomb-like protein
RefseqXP_025982095.10.0cysteine-rich polycomb-like protein isoform X2
TrEMBLA0A445G9J50.0A0A445G9J5_GLYSO; Protein tesmin/TSO1-like CXC 3 isoform C
TrEMBLK7MMZ70.0K7MMZ7_SOYBN; Uncharacterized protein
STRINGGLYMA17G31399.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-57Tesmin/TSO1-like CXC domain-containing protein