PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G190900.1.p
Common NameGLYMA_17G190900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 1018aa    MW: 112226 Da    PI: 5.2542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G190900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-183783148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Glyma.17G190900.1.p 37 KGQWTPEEDDTLRNAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                         799****************************9.************986 PP
2Myb_DNA-binding65.78.4e-2189135148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw ++l
  Glyma.17G190900.1.p  89 KGPWSKEEDEIIIELVKKHGPKKWSTIAQHLP-GRIGKQCRERWVNHL 135
                          79******************************.************996 PP
3Myb_DNA-binding46.96.2e-15141183145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l+++++ +G++ W+  ++ ++ gRt++ +k++w+
  Glyma.17G190900.1.p 141 KEAWTQEEELALIHYHQSFGNK-WAELSKVIP-GRTDNAIKNHWN 183
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2423283IPR017930Myb domain
SMARTSM007178.7E-153685IPR001005SANT/Myb domain
PfamPF002497.1E-163783IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-153893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-223895IPR009057Homeodomain-like
CDDcd001671.65E-134083No hitNo description
PROSITE profilePS5129432.39784139IPR017930Myb domain
SuperFamilySSF466893.48E-3186182IPR009057Homeodomain-like
SMARTSM007171.6E-1988137IPR001005SANT/Myb domain
PfamPF002493.1E-1989135IPR001005SANT/Myb domain
CDDcd001672.26E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2796142IPR009057Homeodomain-like
PROSITE profilePS5129419.492140190IPR017930Myb domain
SMARTSM007171.9E-14140188IPR001005SANT/Myb domain
PfamPF002492.0E-13141184IPR001005SANT/Myb domain
CDDcd001678.21E-11143183No hitNo description
Gene3DG3DSA:1.10.10.609.8E-22143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MDGEQSMAAP SHGQVDGAQK VRALHGRTTG PTRRSTKGQW TPEEDDTLRN AVERFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKHGPK KWSTIAQHLP  120
GRIGKQCRER WVNHLDPTIK KEAWTQEEEL ALIHYHQSFG NKWAELSKVI PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLT QFESVPHAGN LNQPTRLQCS RDDNGPKSTE GEEVSDCSQG  240
SANAVYFPSA TGPSSVDLQT GEAYRPNEEC SLGKDHSPSR ACSEPYYVSI DDVTICIPEI  300
AHQEACTSQF IEQQSHEPGN SICGDCQFNL HSLPNVSSMV LGQESSELQR DFIAPCEICD  360
MVNAPFQTSV ELGVSTSMGP ASMDSLKPEH MLISDDECCR VLFSDAMNDG CFPRVDYNKR  420
DDIVEFSGCT SFCQSCNIQI SETGGTSTSQ LTCPQCSNNY KGISSSQSVP LVLSASDDRL  480
GPTANGNQLF GMEDHHFVSR ACANFTYVNN ISSSCVDGVG SAVMEEPHDI LKGTSKLVPV  540
NNFGCGSDAK QTCNPTAEKT NVHTEKEGSG SLCYEPPRFP SLDIPFFSCD LVQSGSDMQQ  600
EFSPLGIRQF MMSSMNCLTP FRLWDSPSCD DSPDALLKSA AKTFTGTPSI LKKRPRDLLS  660
PLSDKRMDKK LETDMASSTF TRNFSSLVAA FGDNETRKAD MPSYSYPLQK QNSRASVDDD  720
NKENCGHTYK WEQLMNCSPI KSATLDEKNS QRDTVDGNSQ HNVKQRPLDS KMKTTEIEQQ  780
QSGILVEHDM NDLSLSSPDQ VGLKSDRGLD SSAKITKGLN KVNSCSPCVR AKEHEGLSVA  840
VTRVQAPGDN SGEQTRKDGG FETCSIFGGT PFGTPSAWKS PWFFNTFLSS PRLDTEITIE  900
DFGYFMSPGD RSYDALGLLK HISEQTAATY ANAQEILGNE TPKALPKDAS ENDKDKDHEN  960
NYPVNQSGNH SQLPSNALIE RRTLDFSECE TPGRDENSKS SAMSFSSPSS YLMKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.296990.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G190900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210650.10.0transcription factor MYB3R-1-like
RefseqXP_028210652.10.0transcription factor MYB3R-1-like
RefseqXP_028210653.10.0transcription factor MYB3R-1-like
TrEMBLA0A0R0FQH10.0A0A0R0FQH1_SOYBN; Uncharacterized protein
STRINGGLYMA17G26240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein