PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G178500.2.p | ||||||||
Common Name | GLYMA_17G178500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 354aa MW: 39158.7 Da PI: 9.4193 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 208 | 263 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++qLGG+++AtPk+i+elm+v gLt+++vkSHLQkYRl+ Glyma.17G178500.2.p 208 KQRRCWSPDLHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLH 263 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.408 | 205 | 265 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-29 | 206 | 266 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.5E-18 | 206 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-26 | 208 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 210 | 261 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MEVSLDLSLA FVPRRTVCEI LGDIAKSKDG SRRMATIEDL VKRLEDEKKK IEAFKPISKL 60 KEEIKGGVRM KDEAVVEELM KLMKTNSEAN GSLMIVGNES SDTKNWMNSV QLWNVETKQR 120 NEEGDLFVPS NPIEQKNDTN KSVSKTVMKD NKKMSQVPSL GLMSPAVLEL NHRKTESGYG 180 HGSSMIITSS VEIKGHHQSQ QPQQNPRKQR RCWSPDLHRR FVDALQQLGG PQVATPKQIR 240 ELMQVVGLTN DEVKSHLQKY RLHFKRPQGS SIGHANSGLC KMAQDKCGDD KSGSPQGPLF 300 LGGSGKGLSS SGRNSMDTEG DEESDCRNWK ATTIVTFVIA ISIVIITITI VAT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G178500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096931 | 0.0 | BT096931.1 Soybean clone JCVI-FLGm-21I16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551053.1 | 0.0 | transcription factor HHO5 isoform X2 | ||||
Refseq | XP_028209875.1 | 0.0 | transcription factor HHO5-like isoform X2 | ||||
TrEMBL | A0A0R0FEW9 | 0.0 | A0A0R0FEW9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G20520.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 7e-39 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G178500.2.p |