PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G170100.1.p | ||||||||
Common Name | GLYMA_17G170100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 40725.2 Da PI: 4.3848 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50 | 7.3e-16 | 115 | 163 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W++eI+ p + + r++lg+f taeeA + ++a r++le Glyma.17G170100.1.p 115 KYRGVRQRK-WGKWASEIYNPFQ---NNRIWLGTFNTAEEASQVYEARRLELE 163 8*******9.********99654...38*******************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.176 | 115 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-19 | 115 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 115 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-14 | 115 | 162 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-13 | 115 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-20 | 115 | 157 | No hit | No description |
PRINTS | PR00367 | 8.8E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MPECQKQPAS RPKQKLHSLQ ESKAMRKLRI ICDDPDATDS SDDDSKRIQN PRIVKRSMCE 60 ISLLPLLHTF TTLETSSCEL NNKKNTMRVS TKGQPQSKKR VLTHTPSTRR KTPGKYRGVR 120 QRKWGKWASE IYNPFQNNRI WLGTFNTAEE ASQVYEARRL ELEAMAKAQA YKTGSGSAGE 180 PLATTSDKSN CCNSSAAAAA ADVSVSEKFS TTSDDIEESV LPHNSPPSVI EKGNVSTEEA 240 IEANYLVDDL AGLEIPDLSL LNLPPPPSVI EKGNVSTEEA IEANYLVDDL AGLEIPDLSL 300 LNLPPPPSTA GAAVPSGIEP NSGLDFDWLS FDDYEQVFDD FGGLEDIHIS GFDDNEPSEL 360 PDFDFGDFDA D* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.40057 | 1e-137 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G170100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028242648.1 | 1e-163 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | K7MM31 | 0.0 | K7MM31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G18610.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G170100.1.p |