PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G169800.1.p
Common NameGLYMA_17G169800, LOC100784157
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 148aa    MW: 16435.5 Da    PI: 9.0428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G169800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-172272155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  Glyma.17G169800.1.p 22 TRYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFHLRG 72
                         68******99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.65E-262282No hitNo description
PfamPF008476.3E-112272IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-212381IPR016177DNA-binding domain
SMARTSM003801.2E-372386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-302381IPR001471AP2/ERF domain
PROSITE profilePS5103222.4052380IPR001471AP2/ERF domain
PRINTSPR003671.4E-112435IPR001471AP2/ERF domain
PRINTSPR003671.4E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGEEGGIAT KKRGKEGETE TTRYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPVAAA  60
RAYDTAVFHL RGPSARLNFP ELVAAEGPAA DMSAASIRKK ATEVGARVDA LHRQHPHALP  120
AGEFADRVDL NKMPEPENSD CDYWDRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1520801172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G169800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551002.11e-105ethylene-responsive transcription factor ERF008
RefseqXP_028209839.11e-105ethylene-responsive transcription factor ERF008-like
SwissprotO221741e-51ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A445G7T61e-104A0A445G7T6_GLYSO; Ethylene-responsive transcription factor ERF008
TrEMBLI1MVU71e-104I1MVU7_SOYBN; Uncharacterized protein
STRINGGLYMA17G18580.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-54DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]