PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G167100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 220aa MW: 23336.5 Da PI: 5.0988 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 12 | 48 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g+W++eEde l ++v+++G+++W++I+r ++ gR lk Glyma.17G167100.1.p 12 KGPWSPEEDEALQKLVERHGPRNWSLISRSIP-GRPLK 48 79******************************.99775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.393 | 7 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-10 | 7 | 46 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-5 | 11 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 12 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-11 | 12 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.08E-11 | 14 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MAVARKEMDR IKGPWSPEED EALQKLVERH GPRNWSLISR SIPGRPLKRS FSAGTAVPPP 60 GSPSGSDVSE SSAAPGVVSV SVSPSQVFRP VPVRPVVETA SSQDDADADA EDAGPTTSLS 120 LSLPGVESSE ISNRTSTVPV MPVHTVAAAA PVPLPAPEVG LGALNLNAEF MAVMHEMIRK 180 EVRSYMEQQN GMMCFQGMEM MEGFRNVSVK RIGISRVDS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.31847 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G167100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524661.1 | 8e-96 | transcription factor MYB44 | ||||
Refseq | XP_028232134.1 | 8e-96 | transcription factor MYB44-like | ||||
TrEMBL | A0A368UHZ0 | 1e-155 | A0A368UHZ0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G18310.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23290.1 | 4e-20 | myb domain protein 70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G167100.1.p |