PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G162100.1.p
Common NameGLYMA_17G162100, LOC100819404
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 266aa    MW: 31066.9 Da    PI: 9.3194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G162100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-172370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd llv++v+++  g+W+++ar  g++R +k+c++rw +yl
  Glyma.17G162100.1.p 23 KGPWTAEEDRLLVEYVRLHCEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                         79********************************************97 PP
2Myb_DNA-binding52.71e-1676120147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Glyma.17G162100.1.p  76 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9491870IPR017930Myb domain
SMARTSM007173.8E-142272IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-2922117IPR009057Homeodomain-like
PfamPF002491.7E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-232477IPR009057Homeodomain-like
CDDcd001676.72E-102570No hitNo description
PROSITE profilePS5129424.92871125IPR017930Myb domain
SMARTSM007175.8E-1575123IPR001005SANT/Myb domain
PfamPF002491.5E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2478124IPR009057Homeodomain-like
CDDcd001674.46E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MYWGEVMAGH VGRGVLEEEV WRKGPWTAEE DRLLVEYVRL HCEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PQEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKSPSD AAEKARNRLM RKQQFHQQQQ QQQQLQQQHR AQQQQMQFNF DMKGIMAMLE  180
DDIHRTPYKS QSRQEMINMH QNTTEEQGYL YSMLNDNSSA SSAPETSAEE VLWDGLWNID  240
DVHGNFSVAS AASRFGLYNL VAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-26512510128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G162100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241353.10.0uncharacterized protein LOC100819404
TrEMBLC6TGK30.0C6TGK3_SOYBN; Uncharacterized protein
STRINGGLYMA17G17560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-81myb domain protein 305