PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G160500.1.p
Common NameGLYMA_17G160500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 296aa    MW: 32282.4 Da    PI: 10.1518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G160500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Glyma.17G160500.1.p  5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfsailHMRSNVDLKDKWRN 55
                         79***********************************99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.045161IPR017930Myb domain
SuperFamilySSF466896.73E-15267IPR009057Homeodomain-like
SMARTSM007178.3E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12456IPR009057Homeodomain-like
PfamPF002493.5E-7555IPR001005SANT/Myb domain
CDDcd116605.33E-17657No hitNo description
SMARTSM005261.6E-7104182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.372118187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.03E-15124196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-13124190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-7127180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSAI LHMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNLPAPK IDNNHMALST VVRHDEVLDT KPLAVSGGPL QSTNLKEQIS  120
RLVDNHILEA IVYMKEQKGS DKAAIASFIE EKYRFPPNLS KLLPAKLKHM VASGKIIKEK  180
HKYRIAPSST VSEKRRCSSL VLLEDRPKDP SEAHKNDDVN ILLKSQIDAE ISKVKGLTAQ  240
EAAAAAAKAV AEAETAIAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227700.0somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G160500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-122AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235806.20.0MYB transcription factor MYB85
RefseqXP_028211343.10.0telomere repeat-binding factor 2-like isoform X2
SwissprotQ9FJW53e-74TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLI1MVK80.0I1MVK8_SOYBN; Uncharacterized protein
STRINGGLYMA17G17370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-69MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]