PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G154800.3.p | ||||||||
Common Name | GLYMA_17G154800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LSD | ||||||||
Protein Properties | Length: 107aa MW: 10840.8 Da PI: 6.4329 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.1 | 6.2e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL +P GA+sV+Ca+C++V Glyma.17G154800.3.p 28 CSGCRNLLVFPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 47.5 | 2.9e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Glyma.17G154800.3.p 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.3E-12 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.3E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.0E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.8E-13 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGIVV LIVSEV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G154800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090415 | 1e-141 | BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237533.1 | 1e-62 | uncharacterized protein LOC100306356 | ||||
Refseq | XP_003549982.1 | 1e-62 | protein LOL1 | ||||
Refseq | XP_028208959.1 | 1e-62 | protein LOL1 | ||||
Refseq | XP_028232260.1 | 1e-62 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 4e-48 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | I1MVE4 | 2e-67 | I1MVE4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G23710.1 | 4e-62 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-34 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G154800.3.p |
Publications ? help Back to Top | |||
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