PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G154800.1.p | ||||||||
Common Name | GLYMA_17G154800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LSD | ||||||||
Protein Properties | Length: 151aa MW: 15633.3 Da PI: 8.0335 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.3 | 1.1e-12 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL +P GA+sV+Ca+C++V Glyma.17G154800.1.p 28 CSGCRNLLVFPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.1e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Glyma.17G154800.1.p 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 39.8 | 7.6e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Glyma.17G154800.1.p 105 CGNCRMLLAYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 6.4E-4 | 23 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 4.3E-12 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.6E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.26E-5 | 28 | 126 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 9.2E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.6E-11 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.8E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLAYQYGARS 120 VKCAVCNFVT SVGVSVISYS SLTRFSLNCL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G154800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090415 | 0.0 | BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237533.1 | 2e-91 | uncharacterized protein LOC100306356 | ||||
Refseq | XP_003549982.1 | 2e-91 | protein LOL1 | ||||
Refseq | XP_028208959.1 | 2e-91 | protein LOL1 | ||||
Refseq | XP_028232260.1 | 2e-91 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 7e-75 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | I1MVE5 | 1e-101 | I1MVE5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G16600.3 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-61 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G154800.1.p |
Publications ? help Back to Top | |||
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