PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G145300.1.p

Common Name

GLYMA_17G145300, LOC100816039

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 276aa MW: 30690.9 Da PI: 8.4345

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G145300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.8	1.8e-20	124	174	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.17G145300.1.p 124 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAVEAAKAYDRAAFRLRG 174 7******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.236	124	182	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-32	124	183	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-23	124	184	IPR016177	DNA-binding domain
CDD	cd00018	3.41E-32	124	182	No hit	No description
SMART	SM00380	2.1E-39	124	188	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-14	124	174	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	125	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	148	164	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MANAAEVSAL NRIKLHLLGE LSPLATPLNY FDESNPSPSE SSNSQSSSVS LNHYFTDLFE 60 FDSKPQIIDL QTPKTLTSAQ KKPQLNRKPS LLIAVPKKTE WIQFGSPDPN PVMAAPENLP 120 QKNHYRGVRQ RPWGKFAAEI RDPNKRGSRV WLGTFDTAVE AAKAYDRAAF RLRGSKAILN 180 FPLEVSAVAE TVSVAAAEGN VERKRRREEE EVVVEEVKPV VKKEKITEQD VSCFREMPLT 240 PSMWTGFWDS DVKDIFNVPP LSPLSPFGFS PLVAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-31	121	187	2	68	ATERF1
3gcc_A	3e-31	121	187	2	68	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	206	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.54998	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| pod\| root\| seed coat\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G145300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM219231	0.0	HM219231.1 Glycine max ERF protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241150.1	0.0	ethylene-responsive transcription factor 5-like
Refseq	XP_028211612.1	0.0	ethylene-responsive transcription factor 5-like
Swissprot	O80341	1e-64	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A445G6S9	0.0	A0A445G6S9_GLYSO; Ethylene-responsive transcription factor 5
TrEMBL	D9IXB2	0.0	D9IXB2_SOYBN; ERF protein
STRING	GLYMA17G15460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	2e-53	ethylene responsive element binding factor 5

Link Out ? help Back to Top
Phytozome	Glyma.17G145300.1.p
Entrez Gene	100816039

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]