PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G132400.1.p
Common NameGLYMA_17G132400, LOC100781096
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 341aa    MW: 36386.8 Da    PI: 7.027
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G132400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.91.2e-36771782103
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnss 86 
                          ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai+e+tgt++ +a ++          +  + +ss
  Glyma.17G132400.1.p  77 PAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVsvggtL----KIPT-TSS 161
                          6899************************************************************88888554322111....1111.112 PP

                  TCP  87 sgkaaksaakskksqks 103
                          ++k+a ++a++kk++++
  Glyma.17G132400.1.p 162 NEKEAVADASNKKRKRP 178
                          22222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2982173IPR005333Transcription factor, TCP
PROSITE profilePS5136926.79283137IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASNHEMDQD DDGGATDLST SDAETTTTNL NGVPKQHNAF EEETTGFQVL PLKKEEPTYS  60
DPNMGITPVA MQVPVKPAKR SSTKDRHTKV EGRGRRIRIP ATCAARIFQL TRELGHKSDG  120
ETVRWLLEHA EPAIIEATGT GTVPAIAVSV GGTLKIPTTS SNEKEAVADA SNKKRKRPSN  180
SEFVDININD SVSQSSGLAP VHVAHGLVPV WAVTNPSMVV PANAFWMTPN PPMGPANQQH  240
QLWALSPSVF NVAARPISPL VTTNIPEAWP IMTACSNDSN SAVSTSTVGA KVATESSMAP  300
SVSSSGTKSA RTRLLRDFSL QIYDKQELQF LGRSGTHAQS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.276010.0cotyledon| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G132400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549867.10.0transcription factor TCP9
RefseqXP_028208615.10.0transcription factor TCP9-like
SwissprotO646472e-70TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A445G6B30.0A0A445G6B3_GLYSO; Transcription factor TCP9
TrEMBLI1MUS20.0I1MUS2_SOYBN; Uncharacterized protein
STRINGGLYMA17G14160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-73TCP family protein