PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G131900.1.p | ||||||||
Common Name | GLYMA_17G131900, LOC100779318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28260.6 Da PI: 6.7772 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 65 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e+r+p + k++r++lg++ t+e+Aa+a++ a+++l+g Glyma.17G131900.1.p 65 PVYRGVRRRN-NNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALSLRG 116 68*****887.8*********9...6678*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.1E-14 | 65 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-24 | 66 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 66 | 126 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 66 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.062 | 66 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 67 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-26 | 67 | 126 | No hit | No description |
PRINTS | PR00367 | 2.0E-7 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNILGQSLHQ SNNGSYSCSS PETANSSNLP TTPKAVHSDE EVNTLASAHP KKRAGRRIFK 60 ETRHPVYRGV RRRNNNKWVC EVRVPNDKST RIWLGTYPTP EMAARAHDVA ALSLRGKSAC 120 LNFADSAWRL PLPASTNAKE IRRVAAAAAV AIAAEDSRGK QLRTNAIDAV ADCEVSSSDI 180 GVDENCNNNK ASQRFCDLDE ITMPDAPVFE DMHEWLQTMA AEPLRSPTFV TYVNVRDVWN 240 FVEDDAEVSL WSFTV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G131900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550880.1 | 0.0 | dehydration-responsive element-binding protein 1E | ||||
TrEMBL | K7MLG2 | 0.0 | K7MLG2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G14111.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-49 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G131900.1.p |
Entrez Gene | 100779318 |