PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G131800.1.p
Common NameGLYMA_17G131800, LOC100778793
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 177aa    MW: 19127.4 Da    PI: 4.6364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G131800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.9e-141260255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r ++  g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Glyma.17G131800.1.p 12 LYHGIR-CR-GGKWVTEIREPRK---TNRIWLGTFLTPEMAAAAYDVAALALKG 60
                         699999.55.7*********854...49***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-131170No hitNo description
PfamPF008477.5E-81160IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-171270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-251270IPR001471AP2/ERF domain
SMARTSM003808.4E-241274IPR001471AP2/ERF domain
PROSITE profilePS5103218.3471268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSSSSKRH PLYHGIRCRG GKWVTEIREP RKTNRIWLGT FLTPEMAAAA YDVAALALKG  60
NEAVLNFPDS VGRYPVPASN SPSDIRFAAI AAAELMKPEA NNNNNVNAST TNNAAVQSDS  120
NDVLPSFETE FMDEEAIFSM PSLLVDMAGG MLLSPPRMSP PSDNESNYVG ETLWNF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G131800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600809.11e-127ethylene-responsive transcription factor ERF027
RefseqXP_028208644.11e-127ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-43ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A445G6811e-126A0A445G681_GLYSO; Ethylene-responsive transcription factor ERF025
TrEMBLI1MUR61e-126I1MUR6_SOYBN; Uncharacterized protein
STRINGGLYMA17G14100.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]