PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G131200.2.p | ||||||||
Common Name | GLYMA_17G131200, LOC100777890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 74655.7 Da PI: 6.794 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.3 | 1.3e-127 | 280 | 652 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevs 88 lv+lL+ c++a+ s++ +++++++a+l +lasp+g +++ R+ ayfteALa r++r +++++++ ++++++++ +e+++al+l+++v+ Glyma.17G131200.2.p 280 LVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGtTSISRICAYFTEALAIRVTRLWPHVFHIAAATTSRDMVeDDESATALRLLNQVT 369 6899*******************************99**************************9999999887757778899999***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 Pi+kf h+t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+ l+etgerLa fAe l++pfef Glyma.17G131200.2.p 370 PIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPIHVRITGIGE----SKQDLNETGERLAGFAEVLNLPFEF 455 *************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ v++rled++l++L+vk++E++aVn+v qlh++l++ +s +++L l++s++P vvvv+eqea+hn++++ +r++++l+yysalf Glyma.17G131200.2.p 456 HP-VVDRLEDVRLWMLHVKEHETVAVNCVSQLHKTLHD-GSGGA-LRDFLGLIRSTKPSVVVVAEQEAEHNHTRLEARVCNSLKYYSALF 542 **.7********************************44.44444.689****************************************** PP GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee.. 354 ds+ e++lp es r+k+E++ g+ei+n++aceg+er+erhe++++Wr+++ e+ GF+ ++++e++ +q ++ll++++ + y+v+++ Glyma.17G131200.2.p 543 DSIeESGLPIESAVRVKIEEM-YGKEIRNIIACEGRERVERHESFGNWRRMMvEQGGFRCMSVTERELSQSQMLLKMYSCESYSVKKQek 631 ***9999**************.9**************************99935589**********************999***95533 PP GRAS 355 ..sgslvlgWkdrpLvsvSaW 373 ++l W ++pL++vSaW Glyma.17G131200.2.p 632 egATGVTLSWLEQPLYTVSAW 652 3344566************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.88 | 254 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-125 | 280 | 652 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSSMSTQR LDLPSCTTAT FTRNNKDHHH 60 HQPLRPVGLS VDQKHIEAKT STCSLKQHIR LPPLAITASA TPLVEESSII NDNNNKSLKK 120 RLAAEHHDDS FAKRKKSSST TECDWFQPDV VETTTLGGFN NNNTSLVSFS SEEQERVCFL 180 PSEVVSHSAP FPLNPWLESC VTKITNFGEG SHRHPHHHHH PHHHNDHASG SVSNASSESQ 240 SLRLNDNVSE HEVGNGSGNP YYHHRKVEAG EEDDHHGFEL VSLLTGCVDA IGSRNVTAIN 300 HFIAKLGDLA SPKGTTSISR ICAYFTEALA IRVTRLWPHV FHIAAATTSR DMVEDDESAT 360 ALRLLNQVTP IPKFLHFTSN EMLLRAFEGK DRVHIIDFDI KQGLQWPSLF QSLASRSNPP 420 IHVRITGIGE SKQDLNETGE RLAGFAEVLN LPFEFHPVVD RLEDVRLWML HVKEHETVAV 480 NCVSQLHKTL HDGSGGALRD FLGLIRSTKP SVVVVAEQEA EHNHTRLEAR VCNSLKYYSA 540 LFDSIEESGL PIESAVRVKI EEMYGKEIRN IIACEGRERV ERHESFGNWR RMMVEQGGFR 600 CMSVTERELS QSQMLLKMYS CESYSVKKQE KEGATGVTLS WLEQPLYTVS AWGPVDAAAG 660 TSSSFSHPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-66 | 271 | 654 | 10 | 380 | Protein SCARECROW |
5b3h_A | 2e-66 | 271 | 654 | 9 | 379 | Protein SCARECROW |
5b3h_D | 2e-66 | 271 | 654 | 9 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 135 | KKRLAAEHHDDSFAKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29589 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G131200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549861.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_006600806.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_006600807.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_028211243.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_028211244.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_028211245.1 | 0.0 | scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A445G672 | 0.0 | A0A445G672_GLYSO; Scarecrow-like protein 28 isoform A | ||||
TrEMBL | I1MUR1 | 0.0 | I1MUR1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G14030.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G131200.2.p |
Entrez Gene | 100777890 |