PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G123600.2.p
Common NameGLYMA_17G123600, LOC100798439
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 160aa    MW: 17534.8 Da    PI: 4.347
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G123600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB76.25e-241194386
                NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                         ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++ti+++ +l al  lGf +y+e++ + 
  Glyma.17G123600.2.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQVLGFGEYIEEVYAA 94
                         6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-388143IPR009072Histone-fold
SuperFamilySSF471132.85E-3412146IPR009072Histone-fold
PfamPF008081.1E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNREDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKL ETMDSLRGGG GGGKWNNGAE  120
MTEEEALAEQ QRMFAEARAR MNGGAIASKQ PDADQSLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-341213812133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.69860.0epicotyl| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G123600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956741e-178BT095674.1 Soybean clone JCVI-FLGm-15G21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350896.11e-115class 2 transcription repressor NC2 beta 3 isoform 2
RefseqXP_028210800.11e-115protein Dr1 homolog isoform X2
SwissprotP495923e-90NC2B_ARATH; Protein Dr1 homolog
TrEMBLI1MUI21e-114I1MUI2_SOYBN; Uncharacterized protein
STRINGGLYMA05G07750.11e-107(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.41e-94nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]