PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G121500.1.p
Common NameGLYMA_17G121500, LOC100803395
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 381aa    MW: 43108.1 Da    PI: 7.1098
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.94.8e-441212723135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssa 82 
                           k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++           s+ss sece +ss  ++
  Glyma.17G121500.1.p 121 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREktsvvggggkSASSTSECEGVSSLDEV 210
                          69*************************************************************999999998766666788333333333 PP

                  TCP  83 s......nsssg.....kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                          +      n   +     +  ++ +  +k++  +++++++++kesr+kar+rarertrekmr++ +
  Glyma.17G121500.1.p 211 AvstggvN---NeeqerETVPNMMkRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRV 272
                          32333331...0334553333333233444444555588888*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-46121269IPR005333Transcription factor, TCP
PROSITE profilePS5136933.474122180IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.072249266IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYSSNTFLNG NDLISYPNQP FCFRPFSFES NPTYNFSKEE ANSNYALPPP PPPPPLSFFQ  60
SPFDENIFLE HHHHDLLLLH QYSLTDSGVS KNLEVVAEIS PIPCPEQGGI AMEHTPRKRS  120
SKRDRHSKIN TARGLRDRRM RLSLEVAKRF FGLQDMLGFD KASKTVEWLL NQAKGEIKQL  180
AREKTSVVGG GGKSASSTSE CEGVSSLDEV AVSTGGVNNE EQERETVPNM MKRRKSKVCR  240
KSAFNAIDKE SREKARERAR ERTREKMRTR RVLVSDASNL NRLSSWNPFE TVEDSAGTTH  300
HPSLDVHLHE ADQEPISSHN VKEHNLGEDM AHEDNSLALM NKWSPTMLFN SLHNSGILQE  360
HQFAEFQSLG KQWEAYSNQI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G121500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550846.20.0transcription factor TCP12
RefseqXP_014624955.10.0transcription factor TCP12
RefseqXP_028210359.10.0transcription factor TCP12-like
TrEMBLA0A0B2PRP40.0A0A0B2PRP4_GLYSO; Transcription factor TB1
TrEMBLK7MLA90.0K7MLA9_SOYBN; Uncharacterized protein
STRINGGLYMA17G13065.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-21TCP family protein