PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G101300.2.p
Common NameGLYMA_17G101300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 353aa    MW: 40168.6 Da    PI: 6.794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G101300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.8e-221053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + e+ snr+vt+skR+ gi+KKA+ELS+LCd+++ +++fs+tgk
  Glyma.17G101300.2.p 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGK 53
                         57899*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.829153IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-27160IPR002100Transcription factor, MADS-box
CDDcd002663.91E-25284No hitNo description
SuperFamilySSF554554.06E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-16323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-191254IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDIILLMFSP TGKPTLLQGE  60
RSNIEEVIAK FAQLSPQERA KRKMESLEAL KKTFKKLDHD VKIQDFLGSS SQTMEELSHQ  120
VKVLQAHITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVSLQKEN LGKHQLISLE  180
CANQEGMTLP LMMTSLQESQ PLSWLLNNDN HQLMLPNEPK FLSFSDNTNR DVECSTDISL  240
PNYFGHIGSN KLEVGSSPQV TTMGQGGGTM NELNGTTYLN VQHCDQFAYP PPPDIEEVKH  300
FPSMDNKSNI VDYQVNNNFD LPRSLFENGH QFWNSASGSC GIAMYNENDY HR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-14192190MEF2 CHIMERA
6byy_B8e-14192190MEF2 CHIMERA
6byy_C8e-14192190MEF2 CHIMERA
6byy_D8e-14192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G101300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352460.0AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209318.10.0agamous-like MADS-box protein AGL65 isoform X3
SwissprotQ7X9I03e-92AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLK7MKW90.0K7MKW9_SOYBN; Uncharacterized protein
STRINGGLYMA17G10941.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.14e-83AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]