PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G101300.1.p | ||||||||
Common Name | GLYMA_17G101300, LOC100811765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 355aa MW: 40409.9 Da PI: 6.794 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.4 | 6.9e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gi+KKA+ELS+LCd+++ +++fs+tgk Glyma.17G101300.1.p 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGK 53 57899*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.829 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.59E-25 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-19 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDIILLMFSP TGKPTLLQGE 60 RSNIEEVIAK FAQLSPQERA KRKMESLEAL KKTFKKLDHD VKIQDFLGSS SQTMEELSHQ 120 VKVLQAHITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVSLQKEN LGKHQLISLE 180 CANQLQEGMT LPLMMTSLQE SQPLSWLLNN DNHQLMLPNE PKFLSFSDNT NRDVECSTDI 240 SLPNYFGHIG SNKLEVGSSP QVTTMGQGGG TMNELNGTTY LNVQHCDQFA YPPPPDIEEV 300 KHFPSMDNKS NIVDYQVNNN FDLPRSLFEN GHQFWNSASG SCGIAMYNEN DYHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 8e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 8e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 8e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G101300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235246 | 0.0 | AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028209316.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_028209319.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X4 | ||||
Swissprot | Q7X9I0 | 4e-93 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A445G4T3 | 0.0 | A0A445G4T3_GLYSO; Agamous-like MADS-box protein AGL65 isoform A | ||||
TrEMBL | K7MKW8 | 0.0 | K7MKW8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G10941.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 | Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 3e-84 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G101300.1.p |
Entrez Gene | 100811765 |
Publications ? help Back to Top | |||
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