PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G097900.1.p
Common NameGLYMA_17G097900, LOC100805360
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 601aa    MW: 64924.6 Da    PI: 5.584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30246305159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d++++++tYeg+Hnh+
  Glyma.17G097900.1.p 246 MNDGCQWRKYGQKISKGNPCPRAYYRCTIApSCPVRKQVQRCADDKSILITTYEGTHNHS 305
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-31231307IPR003657WRKY domain
SuperFamilySSF1182904.84E-27239307IPR003657WRKY domain
PROSITE profilePS5081127.749241307IPR003657WRKY domain
SMARTSM007745.2E-35246306IPR003657WRKY domain
PfamPF031063.8E-26247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MEIASERSGD GSSGLKEENS VGDDDGRHKQ EIIVEEPLVA NTERSILEAG PSTSPNKKED  60
EVDDQLETAK AEMGVVREEN QRLKMCLNKI MNEYRTLEMQ FQDILKQQGT KKNVDKGKAD  120
SHEEILEESD LVSLCLGRVP TINARSDEKI KVSNKPLKDD EGFNNEELTL GLECKFETSK  180
SGSTTEALPN NIPSPENSCE VPKEEGGESK EALKTMRDST EDEVAQQNPT KKPRVCVRAR  240
CDTPTMNDGC QWRKYGQKIS KGNPCPRAYY RCTIAPSCPV RKQVQRCADD KSILITTYEG  300
THNHSLPPTA TAMASTTSAA ASMLLSGSST SNSNSASIPS ATPTNLHGLN FYLSEGSKPR  360
QLYLSNPALS SSPSHPTITL DLTTSHPAAS SSSSSPFFRF NSNYNNNNQP RYPSSSSSLS  420
FSSNNSSQIA NAISWSNGFL NHNNRDILSS VNFGRQQQME NVYQSYMQKN NSNNNNNNTS  480
LVPQADTISA ATKVITADPT FQSALAAALS SFIGGGGVGN TRGSQGCNFG ESLSLGQKMK  540
WGEVFPVSEK GCASSFVNKT PVANTQTESL MFLPPSSLPF SSTTKSASAS PADNSNTTIN  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22234308275WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G097900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-35AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550773.10.0probable WRKY transcription factor 61
RefseqXP_028209057.10.0probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-117WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A445G4N40.0A0A445G4N4_GLYSO; Putative WRKY transcription factor 72
TrEMBLK7MKV50.0K7MKV5_SOYBN; Uncharacterized protein
STRINGGLYMA17G10630.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-60WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]