PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G096700.1.p
Common NameGLYMA_17G096700, LOC100804450
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 330aa    MW: 37381.1 Da    PI: 4.5536
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G096700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-1982135356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q++ Le+ Fe+++++  e++++LAk lgL  rqV +WFqNrRa++k
  Glyma.17G096700.1.p  82 KKRRLSMNQVQFLEKSFEEENKLEPERKTKLAKDLGLRPRQVAIWFQNRRARWK 135
                          56689************************************************9 PP
2HD-ZIP_I/II126.51.1e-4081173193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qv++LE+sFeee+kLeperK++la++Lgl+prqva+WFqnrRAR+ktk lEkdyeaL++++++lk++ ++L ke+++L++e
  Glyma.17G096700.1.p  81 EKKRRLSMNQVQFLEKSFEEENKLEPERKTKLAKDLGLRPRQVAIWFQNRRARWKTKTLEKDYEALHASFENLKSNYDSLLKEKDNLKAE 170
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Glyma.17G096700.1.p 171 VAS 173
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1866137IPR009057Homeodomain-like
PROSITE profilePS5007117.50877137IPR001356Homeobox domain
SMARTSM003894.8E-1880141IPR001356Homeobox domain
PfamPF000462.6E-1682135IPR001356Homeobox domain
CDDcd000861.42E-1682137No hitNo description
Gene3DG3DSA:1.10.10.605.0E-1984144IPR009057Homeodomain-like
PRINTSPR000311.6E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5117133IPR000047Helix-turn-helix motif
PfamPF021836.8E-15137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAASGSSFSN ITSFLRNQQP SSQPLDSSLF LSAPSIFVSG SRSMVSFEAE GGKGCNGSFF  60
RAFDMDDNGD ECMDEYFHKP EKKRRLSMNQ VQFLEKSFEE ENKLEPERKT KLAKDLGLRP  120
RQVAIWFQNR RARWKTKTLE KDYEALHASF ENLKSNYDSL LKEKDNLKAE VASLNEKVLA  180
RGKQEGHMKQ QAESEEETKR LLHLQEQEPP QRLLLESVSE GEGSKVSSVV GGCKQEDISS  240
ARSDILDSDS PHYTDGVNSA LLEHGDSSYV FEHDQSDMSQ DEEDNLSKSL YPSYLFPKLE  300
EDVDYSDPPE SSCNFGFSEE DHALWTWAY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.43940.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G096700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549660.10.0homeobox-leucine zipper protein HAT5
RefseqXP_028210431.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A445G4I20.0A0A445G4I2_GLYSO; Homeobox-leucine zipper protein HAT5
TrEMBLI1MTP80.0I1MTP8_SOYBN; Uncharacterized protein
STRINGGLYMA17G10490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44homeobox 1