PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G094400.1.p

Common Name

GLYMA_17G094400, MYB175

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 288aa MW: 31159.6 Da PI: 9.6553

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G094400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.5e-14	81	125	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Glyma.17G094400.1.p 81 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 125 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.262	74	130	IPR017930	Myb domain
SuperFamily	SSF46689	2.99E-17	76	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-17	77	128	IPR006447	Myb domain, plants
SMART	SM00717	3.9E-10	78	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-11	80	125	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-12	81	125	IPR001005	SANT/Myb domain
CDD	cd00167	7.50E-10	81	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSRASSAADS AASGEIILFG VRVVVDSMRK SVSMSNLSQY EHPQDGSNNK DALAAGYASA 60 DDAAPQNSGR LRERERKRGV PWTEEEHKLF LVGLQKVGKG DWRGISKNYV KTRTPTQVAS 120 HAQKYFLRRS NLNRRRRRSS LFDITTDTVS AIPMEGEQVQ NQDTLSHSQQ QSPLFPAETS 180 KINGFPMMPV YQFGFGSSGV ISVQGGNGNP MEELTLGQGN VEKHNVPNKV STVSDIITPS 240 SSSSAVDPPT LSLGLSFSSD QRQTSSRHSA LHAIQCFSNG ESIISVA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28719	0.0	epicotyl\| flower\| leaf\| root\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G094400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ550209	0.0	FJ550209.1 Glycine max cultivar Harosoy63 isoflavonoid regulator (MYB176) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001238640.1	0.0	MYB transcription factor MYB173
Refseq	XP_028210669.1	0.0	transcription factor MYB1R1-like
Swissprot	Q2V9B0	6e-66	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A445G4E5	0.0	A0A445G4E5_GLYSO; Transcription factor MYB1R1
TrEMBL	Q0PJH9	0.0	Q0PJH9_SOYBN; MYB transcription factor MYB173
STRING	GLYMA17G10250.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54
Representative plant	OGRP394	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-48	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Glyma.17G094400.1.p
Entrez Gene	780536

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]