PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G088600.1.p
Common NameGLYMA_17G088600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 490aa    MW: 55848.4 Da    PI: 6.6742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G088600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.2e-18206252148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT +Ed ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Glyma.17G088600.1.p 206 KGQWTSDEDRLLIQLVEQYGLRKWSHIAQALP-GRIGKQCRERWHNHL 252
                          799*****************************.*************97 PP
2Myb_DNA-binding582.1e-18260300345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Glyma.17G088600.1.p 260 IWTEEEDKILIQAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 300
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.738201256IPR017930Myb domain
SuperFamilySSF466894.93E-32203299IPR009057Homeodomain-like
SMARTSM007177.4E-17205254IPR001005SANT/Myb domain
PfamPF002496.7E-17206252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-27207258IPR009057Homeodomain-like
CDDcd001675.96E-16209252No hitNo description
SMARTSM007172.9E-17257305IPR001005SANT/Myb domain
PROSITE profilePS5129421.475257307IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-22259305IPR009057Homeodomain-like
CDDcd001672.26E-14261303No hitNo description
PfamPF002497.8E-17261300IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSPSSVSVTP LMDNIETNLT ENYASESKPM HLQENYLKPS MEDQLPFGTP STQGFLQDSH  60
HIDHLQFHVN GSSSSNPIFG VQTPNFDPFD HNVTCESAPP DFEAYECKLF AESNGSGHAH  120
LMDNFQYVGY SLNLPRTNQL DLMVANQSYV PFNALETKPL NFVVPDEVSC ISPPNYYKRV  180
GLNKNLRESP STRITFKARK KSNIVKGQWT SDEDRLLIQL VEQYGLRKWS HIAQALPGRI  240
GKQCRERWHN HLRPDIKKDI WTEEEDKILI QAHAEIGNKW AEIAKKLPGR TENSIKNHWN  300
ATKRRQYSKR KCRSKYPRGS LLQEYIKSLN LDKNPPIDYR KKSDKNANAK TNNNGKAAAQ  360
PQCADQFCPN GQIVPRYDFN EVPDFSLDDN LFEEGCSIDS LLDDMQSAST VDHEKDFDGK  420
IMQCAPTMDG KQSHHQVGIQ CVHVVDEHHH DHETEMVAHT MGNEVKKEFD LVEMMSHMNG  480
SHYSTHSPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-452043062104C-Myb DNA-Binding Domain
1msf_C1e-452043062104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G088600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0283290.0EU028329.1 Glycine max clone BAC gmw1-24M16 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601427.10.0transcription factor MYB98
RefseqXP_028210677.10.0transcription factor MYB98-like
SwissprotQ9S7L23e-95MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0R0FA970.0A0A0R0FA97_SOYBN; Uncharacterized protein
TrEMBLA0A445G4560.0A0A445G456_GLYSO; Transcription factor MYB98
STRINGGLYMA17G09640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-94myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]