PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G079900.1.p | ||||||||
Common Name | GLYMA_17G079900, LOC102670246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 390aa MW: 42546.8 Da PI: 8.9434 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 83.9 | 4.1e-26 | 57 | 132 | 3 | 79 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl+ k i++l+ +++++ ++ ++++ Glyma.17G079900.1.p 57 GGKDRHSKVCTIRGLRDRRIRLSVPTAIELYDLQEKLGLNQPSKVVDWLLETTKSDIDKLPPLQFPHC-FAHHHQQT 132 78*************************************************************55544.22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.9E-22 | 58 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.698 | 58 | 116 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MMIESSSKVH GANNQQEGDD NNIKIEKLSK APSTSSSSRS WSAFRNPRIV RVSRSLGGKD 60 RHSKVCTIRG LRDRRIRLSV PTAIELYDLQ EKLGLNQPSK VVDWLLETTK SDIDKLPPLQ 120 FPHCFAHHHQ QTLLPGTSQF SLGGFYDAAA NGGNENHLMA TKSTRYWDID SHSLNNGKDL 180 VESVSNSLKG KSWIKTNEQE NHQDGGIGGS SSTHNNREEY SSAHYKLFPI GTTTNNSYLP 240 GLLNNGMTHN SSNHHSEPSS LSLSHFGSHG LFPSSHNAHP SSCSGVPFSS CNFSAASSGP 300 QLLFCPPTSA TPASAFYSVE SDPRQSNNNV QIFSSSSQVM MPHPLIQSLH STNSTLNRRI 360 PTSFSSKLLD SDNNNDRSQP NKGSSTTRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G079900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600589.1 | 0.0 | transcription factor TCP17 | ||||
Refseq | XP_006600590.1 | 0.0 | transcription factor TCP17 | ||||
Refseq | XP_006600591.1 | 0.0 | transcription factor TCP17 | ||||
Refseq | XP_028209856.1 | 0.0 | transcription factor TCP17-like | ||||
Refseq | XP_028209858.1 | 0.0 | transcription factor TCP17-like | ||||
TrEMBL | A0A445G3S2 | 0.0 | A0A445G3S2_GLYSO; Transcription factor TCP5 | ||||
TrEMBL | K7MKI8 | 0.0 | K7MKI8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G08761.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G079900.1.p |
Entrez Gene | 102670246 |