PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G076000.4.p
Common NameGLYMA_17G076000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 679aa    MW: 74931.9 Da    PI: 5.2427
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G076000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.22.8e-26206259155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+W  eLH++F+ a+++L G++kA Pk+il+lm+v+gLt+e+++SHLQkYRl
  Glyma.17G076000.4.p 206 KPRLVWDAELHRKFLAAINHL-GIDKAFPKRILDLMNVEGLTRENIASHLQKYRL 259
                          79*******************.********************************8 PP
2Response_reg66.21.5e-22131181109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+++ +++l+++l+k +y +v+++ ++ +al++l++++  +Dl++ D++mp+mdG++ll+  +  e++lp+i  +   ++e + +
  Glyma.17G076000.4.p  13 VLAVDDDETCLSVLENLLRKCQY-NVTTTNQAIKALDMLRKNRnkFDLVISDVNMPDMDGFKLLELVEL-EMDLPVIRYG---DKERVMR 97 
                          799********************.***************998889*******************87655.669****777...7778*** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp+ +eel +
  Glyma.17G076000.4.p  98 GVIHGACDYLTKPVRIEELQN 118
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1421678IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23009.6E-3610131No hitNo description
SuperFamilySSF521723.7E-3010131IPR011006CheY-like superfamily
SMARTSM004482.3E-2411120IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.20912124IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-1913118IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.57E-2314123No hitNo description
PROSITE profilePS5129411.39203262IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-27203263IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18204263IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24206259IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MGVEDRFPVG MRVLAVDDDE TCLSVLENLL RKCQYNVTTT NQAIKALDML RKNRNKFDLV  60
ISDVNMPDMD GFKLLELVEL EMDLPVIRYG DKERVMRGVI HGACDYLTKP VRIEELQNIW  120
QHVVRRRIDS KDKNKTASEG KACSMAGKLA NEEKACYMAG ECSQAMASKS NADQNIKLGQ  180
KRKEQSEDEE EEEYDQENEE PSNQKKPRLV WDAELHRKFL AAINHLGIDK AFPKRILDLM  240
NVEGLTRENI ASHLQKYRLG LKKSTQQPSM VATLGNSDPY QQMDSIEGFR TLSGSGGMIS  300
TTLPSYASGG LFCRLNSPSG LRGINSSLLV QPVHSQNIDS RSIKTLGNMQ LSMFSANQTS  360
SLLQGIPTSI DGNQFQQNNC SIGIRKLSPL DDLSSGFKVS SGFSNSRATV RNPNNSLHGL  420
SNNHLLLQGN SPPTHNSGAF GNHSSLGAAS VKTQSFDPGI CELGYNRCNK SWQGTTQISK  480
FPANTSAVSN NDQLAQNNLN FSSSTFCSGN SPVDFSSTSV VAPPLEDARG KLRCQEGLLE  540
NILLTSCYTQ HQSWEADNRG CNKEMSQTFN TIKSVSPNGD TSSLGHSLDQ NNTVSSKRID  600
VSLVNPSVTQ SSEDEKFYSM ESIDGCILQS MESQEDLMQN TFESLDDIMS EITKQEQNAI  660
MLMDGEMEFD AYHVGSCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25204263362ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G076000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600557.10.0two-component response regulator ARR12 isoform X1
RefseqXP_028208240.10.0two-component response regulator ARR12-like isoform X1
TrEMBLA0A0R0F9660.0A0A0R0F966_SOYBN; Two-component response regulator
STRINGGLYMA17G08380.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-103response regulator 12