PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G059400.4.p
Common NameGLYMA_17G059400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 628aa    MW: 71247.8 Da    PI: 9.5131
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G059400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.47.9e-11487531953
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          ++ +e L ++F++n  p ++ re L+k+lgL++++V+ WF+N R+
  Glyma.17G059400.4.p 487 HDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARY 531
                          67899**************************************97 PP
2PHD38.23.4e-13224279151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C  C    +  +++++lC+ +Ck++fH+kCl+++l++e++p g   w+C+ C++k
  Glyma.17G059400.4.p 224 FCVKCTVreELPDNDIILCNgTCKRAFHQKCLDPPLDTENIPPGeqGWFCKFCECK 279
                          688888844445*******956********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.17E-14216282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-11220279IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.514222279IPR019787Zinc finger, PHD-finger
SMARTSM002493.6E-7224277IPR001965Zinc finger, PHD-type
CDDcd155041.63E-28224276No hitNo description
PfamPF006281.7E-10224279IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.5E-11470530IPR009057Homeodomain-like
SuperFamilySSF466898.13E-10472533IPR009057Homeodomain-like
PROSITE profilePS5007111.272476536IPR001356Homeobox domain
CDDcd000862.83E-8477531No hitNo description
SMARTSM003891.3E-7478540IPR001356Homeobox domain
PfamPF000462.3E-8487531IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MRDSEKKLNK KGSKKSSPLK VRKKGQGKKE KVKVGSKSHT KNAGTDISRK RVISSLKVKG  60
PPKDSSDKKL IIGKKLPIKN KKSSLKPSSK LQGKKASLSS RKEGGDADGA VKLPKMKRKR  120
KKKRQRNNVD LDDPSRLQRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK IKPEKELQRA  180
RKQILKCRLG IRDVIRQLDS LGSLSSIEDS AIAPDGSVYH EHIFCVKCTV REELPDNDII  240
LCNGTCKRAF HQKCLDPPLD TENIPPGEQG WFCKFCECKM EILEATNAHL GTHFSLHSTW  300
QDVFKEEAAI PDGETALLNP EEEWPSDDSE DDDYDPERKE DSHNINTEGA NDSASEDLTS  360
STSLCSSDGE SSPVDGVSHE YFSVKSSIDS DESEDKACGC RQRKAVDYKK LYDEMFGKDA  420
PAYEQLSEDE DWGPGKRKRR EKESDAVDSL MTLHESENMH PNNEHLDMTR KNSSSIKIKR  480
HCFRIPHDAV EKLRQVFAEN ELPPRSIREG LSKELGLDTE KVSKWFKNAR YLALKNRKDF  540
MEISDDVSLK KLLKKRKKRL ISFTFEGDSQ AAELEFERLS KLKTKVDSMK QKLTAIQNSR  600
VKDSNEPHSS EPSIVYVPTA VLREKVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122MKRKRKKK
2117123RKRKKKR
3120125KKKRQR
4436441RKRREK
5548556LKKLLKKRK
6550556KLLKKRK
7552559LKKRKKRL
8553557KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.591770.0flower| pod| seed coat
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G059400.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-160AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550646.20.0pathogenesis-related homeodomain protein
RefseqXP_014625613.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-155PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0R0FHK30.0A0A0R0FHK3_SOYBN; Uncharacterized protein
STRINGGLYMA17G06690.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-152pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]