PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G051400.1.p
Common NameGLYMA_17G051400, LOC100777544
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 214aa    MW: 22992.9 Da    PI: 9.5989
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G051400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.54.7e-3373129158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Glyma.17G051400.1.p  73 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 129
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-3671132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.83472132IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-2875129IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-257597IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607797IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-25106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKPFLSNHTD SMYNCSQVGC SHPMAHTSYP CGDPYFGSSI VAYGPQAINQ QMVPQMLGLA  60
STRIALPVDL AEDGPIYVNA KQYHGILRRR QSRAKLEAQN KLIKSRKPYL HESRHRHALN  120
RVRGSGGRFL SAKQLPQSNA ELVTDAYQKK DASEAENHPS STGENASITF TAISALTSMS  180
SNSVNFPNMA GSSQCSGGLT FGAGALQCTS VGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2373134263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289710.0flower| hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G051400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965760.0BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240022.11e-159nuclear transcription factor Y subunit A-19
RefseqXP_006600160.11e-159nuclear transcription factor Y subunit A-19 isoform X1
RefseqXP_014624789.11e-159nuclear transcription factor Y subunit A-19 isoform X1
RefseqXP_028210333.11e-159nuclear transcription factor Y subunit A-7-like
RefseqXP_028210334.11e-159nuclear transcription factor Y subunit A-7-like
SwissprotQ9LNP69e-38NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A445G2R51e-158A0A445G2R5_GLYSO; Nuclear transcription factor Y subunit A-3 isoform B
TrEMBLC6TG321e-158C6TG32_SOYBN; Uncharacterized protein
STRINGGLYMA17G05920.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.44e-40nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]