PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G042300.1.p
Common NameGLYMA_17G042300, LOC100779314
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 392aa    MW: 43080.3 Da    PI: 7.7861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28183241259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK  kg+++pr+YYrC +   Cpv+k+v+r++ed++vv++tYeg+Hnh+
  Glyma.17G042300.1.p 183 GDGCQWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCSEDESVVITTYEGNHNHS 241
                          69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31167243IPR003657WRKY domain
SuperFamilySSF1182901.83E-26175243IPR003657WRKY domain
PROSITE profilePS5081129.264177243IPR003657WRKY domain
SMARTSM007741.4E-32182242IPR003657WRKY domain
PfamPF031069.2E-25184240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEGKVALKKL LEVQKKAHVN STDALNWTEE PSIKNTLGST LLSLSLNNLE PPQNHEQQHL  60
NQLGLLQIEL EEVKKENQNL RSMLNKISEH YAALQNQLLS AMQQKKLSSS PRNNEDMQRD  120
SRQEDMEKPV LSSCSQFLNT EGKFNKQVTT SQEAKTIEEQ AFEASCKKAR VSVRARSESS  180
LMGDGCQWRK YGQKISKGNP CPRAYYRCNM GTACPVRKQV QRCSEDESVV ITTYEGNHNH  240
SLPPAAKSMA STTSAALKMF LSGSTSSSHG STYSYSNSDL FSPLFTSTYY PSASSSCPTI  300
NLDFTQTSKD NLKFPSVISS NHLQPFPLSL HGQPQQSEGI LPSEKNLALV DVVSAAITND  360
PSLKAALEAA VSSIIGDSQN INNHSQSLPT F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21173243877Probable WRKY transcription factor 4
2lex_A2e-21173243877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217400.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G042300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550582.10.0WRKY transcription factor 6 isoform X1
RefseqXP_028211045.10.0WRKY transcription factor 6-like isoform X1
TrEMBLA0A445G1Q50.0A0A445G1Q5_GLYSO; WRKY transcription factor 42 isoform A
TrEMBLI1MS010.0I1MS01_SOYBN; Uncharacterized protein
STRINGGLYMA17G04710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-45WRKY family protein