PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G039600.1.p | ||||||||
Common Name | GLYMA_17G039600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1006aa MW: 111363 Da PI: 7.7138 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 160 | 237 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Glyma.17G039600.1.p 160 VCQVQDCRADLSNAKDYHRRHKVCDIHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 237 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-31 | 155 | 222 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.898 | 158 | 235 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 159 | 240 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.2E-29 | 161 | 234 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.1E-6 | 277 | 301 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.34E-6 | 805 | 924 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-6 | 811 | 922 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.02E-7 | 811 | 921 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1006 aa Download sequence Send to blast |
MEAEFGAKNQ YLYGPVVSGM KKAVVGNGKR SLEWDLNDWR WDGDLFTAQP LNSVPSDCRG 60 RQFSPPHPEI PAKNANPSTT NLSYSVFISG EGKRELEKRR RGVIGEGEGE GLNYEAGSLS 120 LNLAGQGYPL MVEEEEKSGK KTKVIGTTTA STTTASNRAV CQVQDCRADL SNAKDYHRRH 180 KVCDIHSKAT MALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNR RRRKTHPDVS 240 VVNEGSLNDQ RGSNYLLMSL LRILTNLHSN GSDHTRNQDI LSHLLKNLAS LAGPNNGGRL 300 APLLEESKDL VNAGTPGAAQ DKPNLNSNAP EASRPSSFIK TDNVIITQDP TMPVAQYETP 360 ADGRTQKCIA SGDGGVGNSK PPSRPLFSNV CQPRDSLPSQ LTTAETKVGR GNLNNIDLNN 420 GYNDIQNTVE NHKKPYPPVA SVMGSIDRAS WLQRDSLKSS PPQTSRNSDS TSIQSPSSSS 480 GEAQSRTDRI VFKLFGKDPS DFPLLIRSQI LNWLSHSPTE MESYIRPGCI ILTIYLRLEK 540 SAWEELYCNL GSSLRKLLAE SNDSFWRTGW VYARVQHSVA FLYNGQVVLD VPLHLKSPQH 600 CRISCIKPLA VPASASAQFI VKGFNLFQSS TRLLCALEGK YLVHASCHGL IGGADAPIQH 660 LSFSCHIPNV TGRGFIEVED HGLSSCSFPF IVAEQEVCSE ICKLENVIEA AETTDDIQIK 720 KQQMEEMTRA LDFLQEMGWL LHRSHVKVKL GPMAPFRDLF QFNRFAWLVD FSMDHGWCAV 780 MNKLLDIIFE GGVDAGEHAS IELALLNMGL LHTAVKRNCR PMVELLLRFV PVKTSDGADS 840 EVKQVDEASD RFLFRPDTVG PAGLTPLHVA ASMSGLEDVL DALTDDPRML GIEAWKSSRD 900 STGLTPNDYA CLRGYYSYIQ LVQKKTNKKG ERQHVVDITG IVVDSYTTQK QSNGHRTSMV 960 YWPVMLTMVT IAAVCVCVAL LFKSSPRVYY VFQPFNWESL EYGAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 152 | 234 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27439 | 0.0 | flower| meristem| pod| root| seed coat| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G039600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028241527.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_028241528.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0R0FJD6 | 0.0 | A0A0R0FJD6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G04400.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 | Representative plant | OGRP2595 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G039600.1.p |